Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., tRNA and rRNA cytosine-C5-methylase (NCBI) from Rhodospirillum rubrum S1H

 Score =  201 bits (512), Expect = 3e-56
 Identities = 143/393 (36%), Positives = 202/393 (51%), Gaps = 19/393 (4%)

Query: 4   RAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALMG 63
           RAAA   L  V+D G  L +   AA +++ PRD A  + +    LR++ RLE + +  + 
Sbjct: 9   RAAALDLLSAVLDHGRPLDDVFDAATRKLEPRDRAFARLLAATTLRRMGRLEKVIKTFLD 68

Query: 64  KPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQR 123
           +PL  +      ++ +G  Q+ F+  P HAAV  +V+ A+  +     GLINAVLR    
Sbjct: 69  RPLPRRAVGAKHILRLGAAQMLFLDTPPHAAVATSVDVARVRRLAPYAGLINAVLRKVAD 128

Query: 124 DQEGLDAQATSHDAGRYGHPGWLLKLLKESY-PEQWQQIVEANNSKAPMWLRVNHQHHTR 182
                 A+    D      P WL +    +Y  E   ++ EA   +AP+ L         
Sbjct: 129 HGA---ARLAGFDDPLADLPRWLGQSWIAAYGAETAARLAEACGREAPLDLTPRD----- 180

Query: 183 AEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA-P 241
            +  AL E  G +  P         L T   V +L GF EG   VQDAAA L +     P
Sbjct: 181 GDGGALAELVGGLALPGGSVR----LPTATAVRELAGFTEGQWWVQDAAAALPVLLAGVP 236

Query: 242 QAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLEL--TAQVICG 299
             G  ++D CAAPGGKT  +      +QV A+D   TRL R+RENL+R  L     V+ G
Sbjct: 237 LKGARVVDFCAAPGGKTLQLA--AAGAQVWAVDRSATRLARLRENLERTGLGDAVNVVEG 294

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DA        G+Q D +L+DAPC+ATG  RRHPD  WL+R  D AALA LQ  +LDA  +
Sbjct: 295 DA-LTFTLTDGQQADVVLVDAPCTATGTFRRHPDAPWLKRPGDAAALAALQDSLLDAAVR 353

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPD 392
            ++PGG +VY  CS+ P+E   +++A L R+P+
Sbjct: 354 LVRPGGVIVYCVCSLQPEEAAPRIEALLARSPE 386