Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., RsmB/NOP family class I SAM-dependent RNA methyltransferase from Rhodopseudomonas palustris CGA009

 Score =  126 bits (317), Expect = 1e-33
 Identities = 107/323 (33%), Positives = 149/323 (46%), Gaps = 37/323 (11%)

Query: 132 ATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQ 191
           A  H AG Y  P WL   L E + E       A  S+AP+ LRVN    +R +  A L  
Sbjct: 118 APPHVAGDY--PEWLDGALAEMFGEARVAEAAAMASRAPLDLRVNTLKASRDKELASLAH 175

Query: 192 AGIVTTPHAQAEDALCLETPCD-----VHQLPGFAEGWVSVQDAAAQLALTYLAPQAGEL 246
            G    P +     L +E P D     V   P F +G V VQD  +QLA    A + GE 
Sbjct: 176 LGAKLAPWSPW--GLRIELPADARNPGVQAEPDFIKGAVEVQDEGSQLAALLSAARPGEQ 233

Query: 247 ILDCCAAPGGKTAHILERTP-ESQVVAIDCDETRLKRVRENLQRLEL-TAQVIC--GDAR 302
           ++D CA  GGKT  +      + +++A D D+ +L  + E L R  +  A+V    GDA 
Sbjct: 234 VIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLSRAGVHNAEVRAPKGDAD 293

Query: 303 YPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLK 362
            P    +G   D +L+DAPC+ TG  RR+PD KW  R   +    + Q E+L    + +K
Sbjct: 294 -PLADIKGSA-DLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRLKDQAEVLARAARLVK 351

Query: 363 PGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQ-------------------- 402
           PGG + Y TCS+   EN  QV+AF    P+  +V   PA+                    
Sbjct: 352 PGGRIAYITCSVLAPENTGQVQAFTAAHPEFAVV--PPAEVAAALWDKAELFLAAAWISP 409

Query: 403 PGRQILPGEEAMDGFYYAVLSKQ 425
            G  + P     DGF+ +VL +Q
Sbjct: 410 EGLLMTPRRTGTDGFFVSVLKRQ 432