Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., rRNA methyltransferase-like protein from Phaeobacter inhibens DSM 17395

 Score =  120 bits (302), Expect = 6e-32
 Identities = 96/286 (33%), Positives = 131/286 (45%), Gaps = 20/286 (6%)

Query: 143 PGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQA 202
           P WL      S  +  +    A   +AP+ LRVN +   R      L + GI+   H  A
Sbjct: 130 PDWLWPAFAASLGDAAEAAARALQQRAPVHLRVNQRKTDRDAALIALSEEGILAEAHPAA 189

Query: 203 EDALCL-ETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHI 261
           + AL + E    +     +  G V +QDAA+Q  +  L    G+ +LD CA  GGK+  I
Sbjct: 190 DTALSVTEGARKLRNSSAYLTGLVELQDAASQAVIEALPLADGQRVLDFCAGGGGKSLAI 249

Query: 262 LERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGD---ARYPQQWWQGEQFDRILL 318
             R     V A D    R+K +     R      V+  D   A+ P        FD +L 
Sbjct: 250 AARG-NLAVFAHDIAPQRMKDLPARADRAGAAITVLAPDDVAAKAP--------FDLVLC 300

Query: 319 DAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQE 378
           DAPCS +G  RR P+ KW      +  L + Q +IL+   Q +  GG+L YATCS+   E
Sbjct: 301 DAPCSGSGSWRRAPEGKWRLTQARLDDLCQTQAQILNDASQLVATGGTLAYATCSMLNAE 360

Query: 379 NRLQVKAFLERTPDARLVGSEPAQPGRQILPGEEAMDGFYYAVLSK 424
           N  QV AFL R P+ +L        G Q+  G    DGFY AVLS+
Sbjct: 361 NCDQVAAFLARNPNWQL----QQDHGWQVHGG---TDGFYVAVLSR 399