Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., sun protein (RefSeq) from Shewanella loihica PV-4

 Score =  444 bits (1142), Expect = e-129
 Identities = 232/428 (54%), Positives = 294/428 (68%), Gaps = 9/428 (2%)

Query: 2   NVRAAAASALYQVVDLGHSLSNALPAAQQQIRP-RDHALLQEICYGVLRQLPRLESISQA 60
           N+RA AA  ++QV++ G SLS ALP  QQ++   +D ALL E+CYGV+R LP+L+ +   
Sbjct: 3   NLRALAARVVFQVLEKGVSLSVALPEQQQRLTSGKDKALLAELCYGVMRHLPQLDKLVSD 62

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
            M KPLKGKQR+ H L+LVG YQL F RIP HAA+ ET E  + LK   L  ++N VLRN
Sbjct: 63  CMSKPLKGKQRIVHQLLLVGCYQLYFTRIPGHAAISETAEACRQLKFEGLVKVVNGVLRN 122

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
            QR+Q+ L      ++   +  P WL+K LK +YP+ WQ+++  ++ + PMWLR N    
Sbjct: 123 LQRNQKPLPED---NETLAFNTPAWLIKRLKAAYPDSWQEMIAQSHQRPPMWLRNNQLSQ 179

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
           TR +Y  LL++  I  TP A + DA+ LE+P DV  LPGFA+G  SVQD AAQ A + LA
Sbjct: 180 TREQYLTLLDEQEIAATPGA-SNDAILLESPKDVGMLPGFADGVASVQDGAAQWAASLLA 238

Query: 241 PQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGD 300
           P+A ELILD CAAPGGK+ H+LE  P   +VA+D D  RL+RV++NL RL L A+++ GD
Sbjct: 239 PEANELILDACAAPGGKSCHLLESQPSIDLVAVDFDAKRLERVQQNLDRLSLKAKLVHGD 298

Query: 301 ARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQ 360
           A     WWQG++FDRILLDAPCSATGVIRRHPDIKWLR+  DI  LA LQ +ILD  WQ 
Sbjct: 299 AAKIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELATLQSQILDHCWQW 358

Query: 361 LKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQP----GRQILPGEEAMDG 416
           LKPGG+L+YATCSI PQEN  Q+ AFL RT DA L+     Q     G QI PG++ MDG
Sbjct: 359 LKPGGTLLYATCSILPQENAEQIAAFLARTQDATLIPIAQQQNSDDIGWQITPGQDNMDG 418

Query: 417 FYYAVLSK 424
           FYYA L K
Sbjct: 419 FYYARLVK 426