Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Fmu (Sun) domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (337), Expect = 5e-36
 Identities = 95/327 (29%), Positives = 150/327 (45%), Gaps = 17/327 (5%)

Query: 102 AQDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQI 161
           A +L  P+L+  +     ++ +  E    QA   D    G P WL  L +E   + W + 
Sbjct: 100 ANELPIPKLQYTLAIEEDDFYQRLEAAKQQAALFD----GCPEWLDTLGQEQLGDDWAKE 155

Query: 162 VEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFA 221
             A       +LRVN       +    L + G+ T        AL + +   + +   F 
Sbjct: 156 RAALAQAPKRYLRVNPLKTNSEDLAKRLAKEGVETREVPGVPSALEVISDAALFRTECFK 215

Query: 222 EGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTP-ESQVVAIDCDETRL 280
           +G    QDA +Q     +  + G  ++D CA  GGKT  I  +   + +++A+D ++ +L
Sbjct: 216 QGLFEQQDAGSQHVAAAVGAEPGMRVIDACAGAGGKTLAIAAQMQGKGRLLAMDVEQWKL 275

Query: 281 KRVRENLQRL---ELTAQVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWL 337
             +++  +R     +  ++I       +        DR+LLD PCS  GV++R+PD KW 
Sbjct: 276 DNLKQRARRAGAHNVETRIIASSKTIKRLKLSA---DRVLLDVPCSGLGVLKRNPDAKWR 332

Query: 338 RRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVG 397
              D +  L ELQREIL +  + +K  G L+YATCSI PQENR QV AFL   P    + 
Sbjct: 333 DTPDRLPVLVELQREILQSYSRMVKVDGILIYATCSIMPQENRQQVDAFLAANPHFSFID 392

Query: 398 SEPAQPGRQILPGEEAMDGFYYAVLSK 424
            E       +   +   DGFY A + +
Sbjct: 393 DE------TVSVADTGFDGFYLARMKR 413