Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ribosomal RNA small subunit methyltransferase RsmB from Dechlorosoma suillum PS

 Score =  341 bits (875), Expect = 2e-98
 Identities = 196/417 (47%), Positives = 244/417 (58%), Gaps = 7/417 (1%)

Query: 8   ASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALMGKPLK 67
           ASA    V  G SL+  L    +       A  Q++ YG LR+    E++  AL+ KPL 
Sbjct: 34  ASAAVAAVQAGRSLTEVLAQQAKGELGPTRAQAQDLAYGALRRYGWGEAVLAALLQKPLP 93

Query: 68  GKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQRDQEG 127
             Q     L+L  LY+L      +H  V + V  A  L     RG+IN VLR+Y R +  
Sbjct: 94  EPQ--LQSLLLCALYRLESRPEQSHTVVDQAVAAAATLAKGNFRGVINGVLRSYLRQRPE 151

Query: 128 LDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQA 187
           L A+A    +G + HP W L  L+ +YP  W+ I  A N + PM LRVN    +R EYQA
Sbjct: 152 LLARAAGKPSGAWWHPDWWLSRLRRAYPRDWEAIATAGNGQPPMTLRVNLARGSREEYQA 211

Query: 188 LLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELI 247
            L+ AGI   P   A  AL L+ P  V  LPGF +G+VSVQD  AQ A   L  +AG+ +
Sbjct: 212 RLDAAGIAAVPLGSA--ALLLQKPVPVDALPGFFDGFVSVQDWGAQRAAELLDARAGQRV 269

Query: 248 LDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICGDARYPQQW 307
           LD CAAPGGKTAHILE+     ++A+D D  R +RV ENL RL L A V   DAR P  W
Sbjct: 270 LDACAAPGGKTAHILEQAGVD-LLALDMDGLRCRRVEENLSRLGLRAVVRAADARCPDDW 328

Query: 308 WQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSL 367
           W G  FDRIL D PCSA+GV+RRHPD KWLRR  DIA  A +QR+IL+ +W  L  GG L
Sbjct: 329 WDGRPFDRILADVPCSASGVVRRHPDSKWLRRETDIAQFARVQRQILEVLWPTLAVGGRL 388

Query: 368 VYATCSITPQENRLQVKAFLERTPDARLVGSEPAQPGRQILPGEEAMDGFYYAVLSK 424
           +YATCS+ P+EN  QV AFL R  DAR +G + A    Q+LPG E  DGFYYA+L K
Sbjct: 389 LYATCSVFPEENSQQVSAFLARHGDARRIGIDGADE-LQLLPGSE-HDGFYYALLEK 443