Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., NusB/RsmB/TIM44 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  113 bits (283), Expect = 1e-29
 Identities = 124/423 (29%), Positives = 171/423 (40%), Gaps = 79/423 (18%)

Query: 32  IRPRDHALLQEICYGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPA 91
           I  +D AL  E+ YG LR   R+  + +  +  P K  Q     L +     +   RIP 
Sbjct: 89  ISRQDAALATELVYGYLRSEIRISWLLRRFLTAPEKLPQEALLTLGVAAHEIVHLDRIPD 148

Query: 92  HAAVGETVEGAQDLKGPRLRGLINAVLRNYQR-DQEGLDAQATSHD--------AGRYGH 142
           +AAV   V   +   GP L  L NAVLRN  R   +  +A+    D        +  +  
Sbjct: 149 YAAVDWAVTHIRQRFGPGLGKLANAVLRNVARLGDDARNAEMYHADLPEPRDFLSVHHAA 208

Query: 143 PGWLLKLLKESY-PEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQ---------- 191
           P WL+ L  ++Y P +   ++ A+       +RVN     R+ +QAL +Q          
Sbjct: 209 PRWLVDLWCDAYGPGRAADLLAASAQAPAPAVRVNA---ARSGWQALRDQLIADHGGTAC 265

Query: 192 --AGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGE-LIL 248
             AG+V        +   LE             G +S Q AA+Q  L  L P   E  + 
Sbjct: 266 GHAGVVFPVGGFPAEVAALERA-----------GLLSRQGAASQEVLDALLPDTWEGPVW 314

Query: 249 DCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVI----------- 297
           D C   GGK   +LER  + ++ + D +  RL+ +R + +RL LT   I           
Sbjct: 315 DACCGRGGKALALLERGVDVRLCS-DPNAGRLRGLRADAERLGLTVPAIVRASATQPPCA 373

Query: 298 ------CGDARYPQQWWQGEQ------------------------FDRILLDAPCSATGV 327
                  G    P    Q  Q                           IL+DAPCS  G 
Sbjct: 374 TDSPSAAGGPAGPALPVQPVQPVTPDTSGTPHTPGTNDGTTSSCALRTILIDAPCSGLGT 433

Query: 328 IRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFL 387
           + R PDIK  R   D+ ALA LQ  ILDA    L  GG LVY TC++ P EN  QV+  L
Sbjct: 434 LSRRPDIKLRRSPADLDALAALQGRILDAALSVLPTGGRLVYITCTLNPAENEAQVERLL 493

Query: 388 ERT 390
             T
Sbjct: 494 SLT 496