Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Fmu, rRNA SAM-dependent methyltransferase from Marinobacter adhaerens HP15

 Score =  364 bits (934), Expect = e-105
 Identities = 205/428 (47%), Positives = 262/428 (61%), Gaps = 11/428 (2%)

Query: 3   VRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALM 62
           +RA AA  +  V + G SLS  LP A  ++   +  +LQ +CYG  R   RL+      +
Sbjct: 1   MRAIAAGVMLSVEN-GQSLSQCLPPALNRLPANERPVLQALCYGTCRWFYRLDGELNNRL 59

Query: 63  GKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQ 122
            KPL+   R+ H L+LV L+QL F +   +A + ETVE  + L  P L GL+N VLR  +
Sbjct: 60  KKPLRKPDRIIHHLMLVALFQLRFSQQANYAVLNETVEACRALDKPHLTGLVNGVLRAAE 119

Query: 123 RDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTR 182
           R+     AQ  + DA R+ HP W+++ L+ ++PE W  I++ANN++APM LRVN     R
Sbjct: 120 RE----GAQEPADDAARFSHPVWMVEKLRHNWPENWHHILDANNAQAPMTLRVNALRFAR 175

Query: 183 AEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQ 242
            EY  LL +AGI       A   + L TP  V +LP FA+G VSVQD AAQL  T +   
Sbjct: 176 DEYLGLLAEAGIEAKATRFAPHGIQLATPVPVDRLPWFADGAVSVQDEAAQLCTTLMDLA 235

Query: 243 AGELILDCCAAPGGKTAHILERTPE-SQVVAIDCDETRLKRVRENLQRLELTAQVICGDA 301
            G+ +LD CAAPGGKT  ILE   E ++VVAID    RL RV+ENL RL+L A +   DA
Sbjct: 236 PGQRVLDACAAPGGKTCAILESCGELAEVVAIDESADRLPRVQENLDRLDLNATLKQADA 295

Query: 302 RYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQL 361
               QWW GE FDRILLD PCSA+GVIRRHPDIK LRR  DI  LA +Q  +LDAMW  L
Sbjct: 296 AATDQWWDGEAFDRILLDVPCSASGVIRRHPDIKLLRRESDITPLAAIQLGLLDAMWAIL 355

Query: 362 KPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSE-----PAQPGRQILPGEEAMDG 416
           KPGG LVYATCS+ PQEN   ++ F ++  DA LV  E         GRQ+LP  ++ DG
Sbjct: 356 KPGGRLVYATCSVFPQENHRIIQRFCKQQTDAILVEPEAQWGRDMGAGRQLLPDPDSHDG 415

Query: 417 FYYAVLSK 424
           F+YAVL K
Sbjct: 416 FFYAVLEK 423