Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., NOL1/NOP2/sun family putative RNA methylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (315), Expect = 2e-33
 Identities = 89/284 (31%), Positives = 142/284 (50%), Gaps = 23/284 (8%)

Query: 161 IVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPC-DVHQLPG 219
           ++EA +S+ P+W R    +   A  Q  L+  GI  +     EDA+ L +   +++++  
Sbjct: 208 LIEAMSSRPPIWGRAQSINSQTAVSQ--LQALGIEASLSPFFEDAINLGSKSMNLNEITL 265

Query: 220 FAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHIL---------ERTP-ESQ 269
           + EG + +QD A+Q+     AP+  +   D C+  GGKT  +          + TP +  
Sbjct: 266 YKEGNIEIQDLASQVIGQICAPEPWQHWWDACSGAGGKTLQLRSLMQTAATKQHTPLQGS 325

Query: 270 VVAIDCDETRLKRVRENLQRLELTAQVICGDARYPQQWWQ--GEQFDRILLDAPCSATGV 327
           +V+ D     L+ + +  QR +     I   AR+           FD +L+DAPCS TG 
Sbjct: 326 IVSSDIRANALEELSKRAQRAQFDGISI---ARWRSDALPVAANYFDGVLVDAPCSCTGT 382

Query: 328 IRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFL 387
            RR+PD++WL   D +   A LQ +IL    Q +K GG+L+YATCS++P EN   V AFL
Sbjct: 383 WRRNPDMRWLDTLDAVMDKATLQLDILSRSSQAVKAGGTLIYATCSLSPVENEEVVSAFL 442

Query: 388 ERTPDARLVGSEPAQPGRQ-----ILPGEEAMDGFYYAVLSKQH 426
           ++ P+  LV       G Q     + P E   DG + A + ++H
Sbjct: 443 QQHPEFNLVPIRHPFTGEQTEMLTVWPFEANTDGMFVARMQRKH 486