Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., sun protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  438 bits (1127), Expect = e-127
 Identities = 234/429 (54%), Positives = 294/429 (68%), Gaps = 9/429 (2%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRP-RDHALLQEICYGVLRQLPRLESISQ 59
           MN+RA AA A++ V++ G SLS ALP  Q+ +   +D ALL E+CYGV+R LP++E  + 
Sbjct: 1   MNLRALAAKAIFDVLEKGVSLSVALPEQQKHLASGKDKALLAELCYGVMRTLPQIEKRTA 60

Query: 60  ALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLR 119
             + KPLKGKQR+ H L++VG YQL F RIP+HAA+ ET E  + LK   +  ++N VLR
Sbjct: 61  ECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAEACRQLKFEGMVKVVNGVLR 120

Query: 120 NYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQH 179
           N QR    L  ++ +     Y  PGWL+K LK +YP  WQ+I++ ++ + PMWLR N   
Sbjct: 121 NIQRQLTPLSNESETLS---YNTPGWLIKRLKTAYPGNWQEIIQQSHERPPMWLRNNRLS 177

Query: 180 HTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYL 239
            +R EY A L++  I  +    ++DA+ L  P DV  LP F EG  SVQD AAQ A T L
Sbjct: 178 QSRDEYLAALDKLEIDASA-GLSDDAILLAAPKDVATLPLFLEGAASVQDGAAQWAATLL 236

Query: 240 APQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
           APQA ELILD CAAPGGK+ H+LE  P  +++A+D D  RL+RV++NL RL L A+VI G
Sbjct: 237 APQANELILDACAAPGGKSCHLLELEPSIKLIAVDFDAKRLERVQQNLDRLSLKAEVIHG 296

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DA     WWQGEQFDRILLDAPCSATGVIRRHPDIKWLR+  DI  LAELQR+ILD  W+
Sbjct: 297 DAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWK 356

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDAR---LVGSEPAQP-GRQILPGEEAMD 415
            LKPGG+L+YATCSI PQENR Q+ AFL RT DA+   LV    +Q  G QI PG+  MD
Sbjct: 357 WLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLVQQASSQDIGWQITPGQHNMD 416

Query: 416 GFYYAVLSK 424
           GFYYA L K
Sbjct: 417 GFYYARLLK 425