Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., sun protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  147 bits (370), Expect = 1e-39
 Identities = 141/450 (31%), Positives = 187/450 (41%), Gaps = 61/450 (13%)

Query: 4   RAAAASALYQVVDLGHSLSNALP--AAQQQIRPRDHALLQEICYGVLRQLPRLESISQAL 61
           RA A  AL  VV  G  +  AL    +   +  +D AL  E+ YG LR   RL  + +  
Sbjct: 37  RAGALVALDAVVRAGVDVQAALDDSLSHASLSRQDAALCTELVYGYLRSEIRLSWLVRRF 96

Query: 62  MGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNY 121
           +  P K    V   L L         R+PA+A +   V   + L G  +  L NAVLRN 
Sbjct: 97  LKAPSKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGTGVSRLANAVLRNV 156

Query: 122 QRDQEG---LDAQATSHD-----AGRYGHPGWLLKLLKESYPEQ-WQQIVEANNSKAPMW 172
            R  +     D  A   D       R+  P WL+ L  + Y E+    ++EA+       
Sbjct: 157 DRLGDAWRVADFYACVGDNRDRLCVRHSAPRWLVDLWCDGYGEEKTTALLEASLLHPAPG 216

Query: 173 LRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLE---TPCDVHQLPGFAEGWVSVQD 229
           +R+N      A+    L      T   A  +  +      TP +V  L   +EG  S Q 
Sbjct: 217 VRINLARADGADCLQQLLSGNAGTGRQAAGKAGVVFTSGGTPSEVTSL--VSEGRASRQS 274

Query: 230 AAAQLALTYLAPQAGE-LILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQ 288
            A+Q AL  L P+     + DCC   GGKTA ++E T  + V A D   +RL+ +R +  
Sbjct: 275 GASQSALAALEPEVWPGPVWDCCCGRGGKTAALVE-TGVAVVAASDPSMSRLRGLRRDFA 333

Query: 289 RLELTAQVI---------------------CGDARYP----------------------Q 305
           RL L   +                      CGD   P                       
Sbjct: 334 RLGLPVPLAVRASAVRPPFSCAASMARAGSCGDGGSPLAIDGIEVEVSRGQSATGLVNAS 393

Query: 306 QWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGG 365
               G  F  IL+DAPCS  G + R PDIK  R    IA L  LQ  ILDA+W  L+  G
Sbjct: 394 GLGSGGLFGTILVDAPCSGLGTLSRRPDIKRKRTTAQIAELVALQEAILDAVWPCLRSDG 453

Query: 366 SLVYATCSITPQENRLQVKAFLERTPDARL 395
            L Y TC+  PQEN L++ AFLER  DARL
Sbjct: 454 VLAYITCTRNPQENELRIAAFLERHLDARL 483