Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., sun protein (RefSeq) from Shewanella sp. ANA-3

 Score =  439 bits (1130), Expect = e-128
 Identities = 233/429 (54%), Positives = 291/429 (67%), Gaps = 9/429 (2%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRP-RDHALLQEICYGVLRQLPRLESISQ 59
           MN+RA AA A+++V++ G SLS ALP  Q+ +   +D ALL E+CYGV+R LP++E    
Sbjct: 2   MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLASGKDKALLAELCYGVMRTLPQIEKRVA 61

Query: 60  ALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLR 119
             + KPLKGKQR+ H L++VG YQL F RIP+HAA+ ET E  + LK   +  ++N VLR
Sbjct: 62  ECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAEACRQLKFEGMVKVVNGVLR 121

Query: 120 NYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQH 179
           N QR    L   +T  +   Y  PGWL+K LK +YP+ WQ+I++ ++ + PMWLR N   
Sbjct: 122 NIQRQ---LTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIIQQSHERPPMWLRNNRLS 178

Query: 180 HTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYL 239
            +R  Y A L +  I  +    ++DA+ L  P DV  LP F EG  SVQD AAQ A T L
Sbjct: 179 QSRDAYLAALSELEIEASA-GLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATLL 237

Query: 240 APQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
           APQA EL+LD CAAPGGK+ H+LE  P  Q+VA+D D  RL+RV++NL RL L A+VI G
Sbjct: 238 APQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIHG 297

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DA     WWQGEQFDRILLDAPCSATGVIRRHPDIKWLR+  DI  LAELQR+ILD  W+
Sbjct: 298 DAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCWK 357

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDARL----VGSEPAQPGRQILPGEEAMD 415
            LKPGG+L+YATCSI PQENR Q+ AFL RT DA+L      +     G QI PG+  MD
Sbjct: 358 WLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGWQITPGQHNMD 417

Query: 416 GFYYAVLSK 424
           GFYYA L K
Sbjct: 418 GFYYARLLK 426