Pairwise Alignments

Query, 481 a.a., potassium uptake protein TrkH from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., potassium uptake protein TrkH (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  308 bits (789), Expect = 3e-88
 Identities = 173/488 (35%), Positives = 272/488 (55%), Gaps = 12/488 (2%)

Query: 2   LNLRPITFIIGLVLSKLALFMYVPTLVAFFTGSGGFLDFAQAVIITHLVAFLCLSIGRTE 61
           +  + I  IIGL++   ++ M  P L+A +   GG   F QA  ++  + F      R  
Sbjct: 1   MQYKTIIRIIGLLIGLFSITMLPPALIAIWYNDGGGTAFIQAFFVSLFIGFWLWYPHRRC 60

Query: 62  HFRLNVRDMFLITSLVWTIASAFAALPFVFINH--ISFTDAYFETMSGLTTTGSTVLSGL 119
              L  R+ FLI  L WT+  +  ALPF+F +   +S+TD++FE+ S LTTTG+TV+ GL
Sbjct: 61  KEELRTREGFLIVVLFWTVLGSIGALPFIFSSQPDLSWTDSFFESFSALTTTGATVIVGL 120

Query: 120 DDMPPSILLWRSILQWLGGVGFIVMAVAVLPMLNVGGMKLFQTESSD--WSDKSSPRAKT 177
           D +P +IL +R +LQWLGG+G IV+AVA+LP+L +GGM+L++ E        K +PR   
Sbjct: 121 DSLPKAILFYRHLLQWLGGMGIIVLAVAILPVLGIGGMQLYRAEIPGPVKDSKMTPRIAE 180

Query: 178 VAKNIVAVYLVLTGLCFLSYIATGMTPFEAINHAFTTLSTGGYSTSDSSMNRFSHGA-HW 236
            AK +  +YL+LT  C  +Y   GM+ F+AI H+F+T++ GG+ST D+SM  F+    + 
Sbjct: 181 TAKALWYIYLLLTISCAGAYWLAGMSMFDAICHSFSTIAIGGFSTHDASMGYFNSPVINL 240

Query: 237 VGTLFMFLGGLPFLLFVQAL--RKQSARALLKDEQVRGFFWLFMISSLLVAGWLWLKNDY 294
           +   F+ +  + F +   A   R  + +   +D + +    + ++ + +    L+  +D 
Sbjct: 241 ICVFFLIVSAVNFSVHFAAFSWRGINLKVYFRDTEFKVLVAIQLLLTAICFFTLYFYSDI 300

Query: 295 AIL--DALRVSMFNIVSVVTTTGYGLDDFTAWGALPSTIFAFLLMAGACSGSTSGGIKVF 352
                + L  ++F  VS+ TTTG+G D F  W      +  F    G C GST+GGIKV 
Sbjct: 301 YDTPEETLNHALFQAVSIATTTGFGTDSFNMWPLFLPMLLMFSSFIGGCGGSTAGGIKVI 360

Query: 353 RFQIAMALLKKQLLNLIHPSGIFIQRYNKRPVNEEIIRSVVAFGLTFFITIVVLAGALSA 412
           R  + +    ++L  L+HP  +F  R   + + + I+ +V  F   + +  V+   AL A
Sbjct: 361 RVILLLLQGSRELKRLVHPKAMFSIRIGSKALPDRIVDAVWGFFSAYALVFVLCMLALMA 420

Query: 413 MGLDSVTSISGAVTAVANVGPGMGSIIGPTGNFAPLPDAAKWLLSFGMLMGRLEILTILV 472
           MGLD +TS S     + N+GPG+G +     N+A + D AKW+L   ML GRLEI T+L+
Sbjct: 421 MGLDDITSFSATAACLNNLGPGLGEV---ASNYASIGDGAKWVLVVAMLFGRLEIFTLLI 477

Query: 473 LFFPAFWR 480
           LF P FW+
Sbjct: 478 LFTPTFWK 485