Pairwise Alignments

Query, 215 a.a., hemolysin III family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., channel protein, hemolysin III family subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  234 bits (597), Expect = 9e-67
 Identities = 116/208 (55%), Positives = 149/208 (71%), Gaps = 1/208 (0%)

Query: 5   NSYGFKEEVANAISHGVGLILGIVGLVLLLVKAVDQQADALTITSMSIYGGSMIALFLAS 64
           ++Y   EE+AN+ISHG+G+I G VGL+ +L+K VD  + ++ +T + IYG S+I LFL+S
Sbjct: 10  SAYSLSEEIANSISHGLGVIAGAVGLIFMLLKGVDHLS-SIQLTGVIIYGASLILLFLSS 68

Query: 65  TLYHAIPYQRAKRWLKTFDHCAIYLLIAGSYTPFLLVSLRTPLAVGLMIVIWSLALIGIL 124
           TLYH++ ++  K  LK  DHCAIY LIAG+YTP +L+SL+  L+  ++  IWSLA+ GIL
Sbjct: 69  TLYHSVTHRGWKHKLKIVDHCAIYCLIAGTYTPLMLISLQGNLSTIILTAIWSLAIGGIL 128

Query: 125 MKIAFVYRFKKLSLVTYLTMGWLSLIVIYQLAIHLEVGGLTLLAAGGLIYSLGVIFYVAK 184
            K  F++RFKKLSLV YL MGWL + VI  L   +   G  LL  GGL Y+LGVIFYV K
Sbjct: 129 FKTLFIHRFKKLSLVLYLAMGWLCMTVIGDLTAAMSPLGFNLLLLGGLFYTLGVIFYVGK 188

Query: 185 RIPYNHAIWHAFVLAGCACHFLAIYLYV 212
           RIPYNHAIWH FVLAG   HF  IYL V
Sbjct: 189 RIPYNHAIWHLFVLAGAMSHFFCIYLTV 216