Pairwise Alignments

Query, 184 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  181 bits (459), Expect = 7e-51
 Identities = 94/180 (52%), Positives = 125/180 (69%), Gaps = 4/180 (2%)

Query: 1   MSVLAISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLATLANHALAAWLGVVVA 60
           M    +S + V LAEIGDKTQLLSL+LA+RYRKPIPII  +F+ATL NHA +  LG  +A
Sbjct: 1   MQSFLVSTSVVGLAEIGDKTQLLSLVLAARYRKPIPIILGVFVATLINHAASGALGAWLA 60

Query: 61  DYLSPDILKWVLVVSFLAMAGWILIPDKLDGEESISTRGP---FVASFIAFFMAEIGDKT 117
             LSP IL W +V SF  MA WILIPDKLDG E++ST  P   F  + + FF+AE+GDKT
Sbjct: 61  SVLSPSILNWAVVASFAVMAVWILIPDKLDGAEAVSTTHPMGVFGTTALTFFLAEMGDKT 120

Query: 118 QIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADKMPLGLIRKVTAGLFLLM 177
           Q+ T  L A++ +    V+ GTTLGM+LANVPV+ +G   AD++P   +  + A +F+++
Sbjct: 121 QVVTIALAARFHEFFG-VVAGTTLGMMLANVPVIYLGHKFADRLPTKAVHILAAVIFVVL 179



 Score = 44.7 bits (104), Expect = 1e-09
 Identities = 25/84 (29%), Positives = 44/84 (52%)

Query: 1   MSVLAISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLATLANHALAAWLGVVVA 60
           M V   +  T  LAE+GDKTQ++++ LA+R+ +   ++A   L  +  +    +LG   A
Sbjct: 101 MGVFGTTALTFFLAEMGDKTQVVTIALAARFHEFFGVVAGTTLGMMLANVPVIYLGHKFA 160

Query: 61  DYLSPDILKWVLVVSFLAMAGWIL 84
           D L    +  +  V F+ + G+ L
Sbjct: 161 DRLPTKAVHILAAVIFVVLGGFAL 184