Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Topoisomerase IV subunit B (EC 5.99.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  363 bits (932), Expect = e-104
 Identities = 212/552 (38%), Positives = 321/552 (58%), Gaps = 15/552 (2%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           +++Y++ +I+VL GLD VRKRPGMY     D +  +H+  EV+DNS+DEALAG+ + + V
Sbjct: 6   ASSYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQV 61

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
            +H D+S+ VSDDGRG+P ++HPEE VS  E+I+T LHAGGKF + +Y+ SGGLHGVG+S
Sbjct: 62  ILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 121

Query: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET--ERTGTTVRFWPSAQTFTNI 179
           VVNALS +V + + R G  +  T+  G     L VVG      TGT+V F P  + F + 
Sbjct: 122 VVNALSTQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDPKYFDSP 181

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           +F    L   L+  + L  G+ +   D+   +K + + YE G+++++         + ++
Sbjct: 182 KFSVSRLKHVLKAKAVLCPGLLVSFEDKATGEKVE-WHYEDGLRSYLVDAVSGFERLPDE 240

Query: 240 VFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYM 298
            F       +  +V+ A+ W  +G +     + N IP   GGTH+ G R  L   +  + 
Sbjct: 241 PF-CGSLAGNKEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 299

Query: 299 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 358
           +      +     + +D  E +  V+S+K+ +P+FS QTK++L S E  + V   + +  
Sbjct: 300 EFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAF 358

Query: 359 ADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAL 418
           + +L  NP     +    I+ A  R    KA +   RK       LPGKLADC  +DP  
Sbjct: 359 SLWLNANPETGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMR 415

Query: 419 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 478
           SEL++VEGDSAGGSAKQ R+++ QAILPL+GKILN  +    ++L+SQEV  +  A+G  
Sbjct: 416 SELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIGVD 475

Query: 479 IGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKV 538
            G ++ +  +LRY  I I+ DAD DG HI TLL   F +    L++ G++Y+A PPLY++
Sbjct: 476 PGAEDMS--QLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRI 533

Query: 539 KKGKQEQYIKDE 550
             GK+  Y  DE
Sbjct: 534 DLGKEIYYALDE 545



 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 724 LDWLIKESRRGL-SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           LD L+ E +RG   + R+KGLGEMNP QL ETTMDP TRR++Q+T++D     E+   L+
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEATSEMMDMLL 611

Query: 783 G-DQVEPRRAFIET 795
              +   R++++E+
Sbjct: 612 AKKRAGDRKSWLES 625