Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 566/803 (70%), Positives = 663/803 (82%), Gaps = 3/803 (0%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           ++ YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAG+C DI +
Sbjct: 4   NHTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDISI 63

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
           TIH D S++V D+GRGIP ++H EE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS
Sbjct: 64  TIHTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 122

Query: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEF 181
           VVNALSE+++LTI R GK+  Q Y HGVPQAPLA VGET+ +GT + F PSA+TF NI F
Sbjct: 123 VVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGETDSSGTQIHFKPSAETFQNIHF 182

Query: 182 HYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVF 241
            +DILAKRLRELSFLNSGV I L DER   K++ F YEGG+ AFV +LN NKTP++E VF
Sbjct: 183 SWDILAKRLRELSFLNSGVGIVLRDERTA-KEELFKYEGGLSAFVAYLNTNKTPVNE-VF 240

Query: 242 HFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKE 301
           HFN +R+DG+ VEVA+QWND F ENI CFTNNIPQRDGGTHLAGFR ALTR LN+Y+++E
Sbjct: 241 HFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSYIEQE 300

Query: 302 GFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADF 361
           G +KK + AT+GDDAREGLTA++SVKVPDPKFSSQTKDKLVSSEVK+AVE  M +  ADF
Sbjct: 301 GLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKHFADF 360

Query: 362 LAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 421
           L E+PSEAK V  K+IDAARAREAARKAREMTRRKGALD+AGLPGKLADCQEKDPALSEL
Sbjct: 361 LLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEL 420

Query: 422 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 481
           YIVEGDSAGGSAKQGRNRK QAILPLKGKILNVEKARFDKM+SSQEV TLITALGCGIGR
Sbjct: 421 YIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGR 480

Query: 482 DEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKG 541
           DEYN DKLRYHNIIIMTDADVDGSHIRTLLLTFF+RQ+PELIERGY+YIAQPPLYKVK+G
Sbjct: 481 DEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYKVKRG 540

Query: 542 KQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRR 601
           KQEQYIKD+EAM +Y    A++ A LHVN  AP L+G  LEKLV  Y   +K ++R+SR 
Sbjct: 541 KQEQYIKDDEAMEEYLTQSALEDASLHVNEGAPGLSGGALEKLVNDYRTVMKTLQRLSRL 600

Query: 602 YPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVY 661
           YP  +    IY+PR+  E  AD +A++AW ++    L   E     Y+V +  + E +++
Sbjct: 601 YPQELTEHFIYLPRVPVEQLADHSAMQAWLEQYSALLKVGERSGLIYNVSLREDKERHLW 660

Query: 662 LPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFA 721
           LP++++ +HG+      + D   S +Y  +  L E L+ L+E GA+++RGER + +++F 
Sbjct: 661 LPEVEISSHGLASYITFNRDFFGSNDYRTVTALGEKLNSLLEEGAYVQRGERKKQVATFK 720

Query: 722 AALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTL 781
            AL+WL+ E  R  S+QRYKGLGEMNPDQLWETTMDP  RRM++VTIEDA+GAD++F TL
Sbjct: 721 QALEWLMTEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIGADQIFNTL 780

Query: 782 MGDQVEPRRAFIETNALKVANLD 804
           MGD VEPRR FIETNAL V+NLD
Sbjct: 781 MGDAVEPRRDFIETNALAVSNLD 803