Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas syringae pv. syringae B728a

 Score = 1117 bits (2890), Expect = 0.0
 Identities = 554/806 (68%), Positives = 656/806 (81%), Gaps = 4/806 (0%)

Query: 1   MSNN--YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKD 58
           MS N  YDSSSIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEVVDNSIDEALAG+C D
Sbjct: 1   MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD 60

Query: 59  IVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 118
           I + IH D S++V D+GRGIP ++H EE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
Sbjct: 61  ISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTN 178
           GVSVVNALSE +LLT+ R GKI  QTY HGVPQ P+ +VGE++ TGT + F PSA+TF N
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGESDSTGTQIHFKPSAETFKN 180

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
           I F +DILAKR+RELSFLNSGV I L DER   K++ F YEGG++AFV +LN NKTP++E
Sbjct: 181 IHFSWDILAKRIRELSFLNSGVGIVLKDERS-GKEELFKYEGGLRAFVEYLNTNKTPVNE 239

Query: 239 KVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYM 298
            VFHFN +R+DGI VE+A+QWND F EN+ CFTNNIPQRDGGTHL GFR ALTR LNNY+
Sbjct: 240 -VFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 298

Query: 299 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 358
           ++EG +KK + AT+GDDAREGLTA++SVKVPDPKFSSQTKDKLVSSEVK+AVE  M +  
Sbjct: 299 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 358

Query: 359 ADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAL 418
           +DFL ENP+EAK V  K+IDAARAREAARKAREMTRRKGALD+AGLPGKLADCQEKDPAL
Sbjct: 359 SDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 418

Query: 419 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 478
           SELY+VEGDSAGGSAKQGRNR+ QAILPLKGKILNVEKARFDKM+SSQEV TLITALGCG
Sbjct: 419 SELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCG 478

Query: 479 IGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKV 538
           IGR+EYN DKLRYHNIIIMTDADVDGSHIRTLLLTFF+RQ+PELIERGYIYIAQPPLYKV
Sbjct: 479 IGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKV 538

Query: 539 KKGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERM 598
           KKGKQEQYIKD+EAM +Y    A++ A LH++  AP ++G  LEKLV  +   +K ++R+
Sbjct: 539 KKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKTLKRL 598

Query: 599 SRRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAEL 658
           SR YP  +    +Y+P I  E  +D   ++AW      +L   E     Y   +  + E 
Sbjct: 599 SRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLREDRER 658

Query: 659 NVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPIS 718
           NV+LP++++ +HG+++    + D   S +Y  +  L   +  L+E GA+++RGER +P++
Sbjct: 659 NVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERKKPVN 718

Query: 719 SFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELF 778
            F  AL WL+ ES +  +IQRYKGLGEMNPDQLWETTMDP  RRM++VTIEDA+GAD++F
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIF 778

Query: 779 TTLMGDQVEPRRAFIETNALKVANLD 804
            TLMGD VEPRR FIE+NAL V+NLD
Sbjct: 779 NTLMGDAVEPRRDFIESNALAVSNLD 804