Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 1078 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Synechocystis sp000284455 PCC 6803

 Score =  431 bits (1109), Expect = e-125
 Identities = 228/434 (52%), Positives = 296/434 (68%), Gaps = 6/434 (1%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           + NY +  I+VL+GL+ VRKRPGMYIG T    GLHH+V+EVVDN+IDEALAGYC  I +
Sbjct: 5   TTNYGADQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAIDEALAGYCTHIEI 63

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
            I+ D SV+V D+GRGIPT++HP    SA E ++TVLHAGGKF    YKVSGGLHGVGVS
Sbjct: 64  DINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 123

Query: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPL-AVVGETERTGTTVRFWPSAQTFTN-I 179
           VVNALSE V + ++R GK H Q +  G P   L A   E   TGT V F P  Q F + I
Sbjct: 124 VVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEGHSTGTQVSFLPDTQIFKDGI 183

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREED-KKDHFMYEGGIQAFVTHLNRNKTPIHE 238
           EF Y  LA RL+EL++LN+GV I   D R +  K++ F YEGGI+ +VT++  +KTP+HE
Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243

Query: 239 KVFHFNQEREDGISVEVAMQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 297
           ++ + + E+ D + VEVA+QW  D + + +  F NNI   DGGTHL G +  LTRTLN+ 
Sbjct: 244 EIIYTSGEKND-VQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSV 302

Query: 298 MDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEK 357
             K    K   +   G++ REGLT V+SVKVPDP+F  QTK KL ++EV+  V++ + E 
Sbjct: 303 ARKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEA 362

Query: 358 LADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417
           L +FL  NP  A  +  K + A +A EAAR+ARE+ RRK  L+ + LPGKLADC  KDP+
Sbjct: 363 LTEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPS 422

Query: 418 LSELYIVEGDSAGG 431
            SE++IVEGDSAGG
Sbjct: 423 ESEIFIVEGDSAGG 436



 Score =  150 bits (379), Expect = 4e-40
 Identities = 73/140 (52%), Positives = 97/140 (69%)

Query: 416 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475
           P      +  G     SAKQGR+R+ QAILPL+GKILN+EK    K+  + E+  LITAL
Sbjct: 856 PHTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITAL 915

Query: 476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPL 535
           G GI  D+++   LRYH ++IMTDADVDG+HIRTLLLTFFYR   +L+++GYIYIA PPL
Sbjct: 916 GLGIKGDDFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPL 975

Query: 536 YKVKKGKQEQYIKDEEAMNQ 555
           YK+++GK   Y   +  + +
Sbjct: 976 YKLERGKNHFYCYSDRELQE 995



 Score = 89.7 bits (221), Expect = 8e-22
 Identities = 43/70 (61%), Positives = 53/70 (75%)

Query: 736  SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIET 795
            +IQR+KGLGEM P QLW+TTM+PE+R M +V IEDA  AD +FT LMGD+V PRR FIET
Sbjct: 1007 TIQRFKGLGEMMPQQLWDTTMNPESRTMKRVHIEDAAEADRIFTVLMGDRVAPRREFIET 1066

Query: 796  NALKVANLDV 805
               K+   D+
Sbjct: 1067 YGTKLDLTDL 1076