Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  581 bits (1498), Expect = e-170
 Identities = 302/564 (53%), Positives = 394/564 (69%), Gaps = 11/564 (1%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+N Y +S I+VL+GL+ VRKRPGMYIG T    GLHH+V+EVVDN++DEALAGYC  I 
Sbjct: 1   MANEYGASQIQVLEGLEPVRKRPGMYIGSTGP-KGLHHLVYEVVDNAVDEALAGYCNTID 59

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V + ED S  V+D+GRGIPT++HP+   SA E ++T+LHAGGKF    YKVSGGLHGVGV
Sbjct: 60  VRLLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGV 119

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNI 179
           SVVNALSE V +T++R GK H Q +  G P   L V  + + R GT VRF P A  F+  
Sbjct: 120 SVVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSET 179

Query: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDH------FMYEGGIQAFVTHLNRN 232
            EF Y  LA RL+EL++LN+GV I  TDER +  K+H      + +EGGI+ +V ++N +
Sbjct: 180 TEFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTD 239

Query: 233 KTPIHEKVFHFNQEREDGISVEVAMQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRGALT 291
           K  +H ++  F Q  +DG+ VE A+QW  D + +NI  F NNI   DGGTH+ G +  LT
Sbjct: 240 KQALHSEII-FVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLT 298

Query: 292 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 351
           RT+N    K    K A    SG++ REGLTA+VSVKVPDP+F  QTK KL ++EV+  V+
Sbjct: 299 RTMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVD 358

Query: 352 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 411
           + + E L ++L  +PS A  +  K I A  A EAAR+ARE+ RRK  L+ + LPGKLADC
Sbjct: 359 TLVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADC 418

Query: 412 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 471
             +DP  SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILN+EK    K+  + E+  L
Sbjct: 419 SSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQAL 478

Query: 472 ITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIA 531
           ITALG GI  +E++  +LRYH I+IMTDADVDG+HIRTLLLTFFYR    L+E+GYIYIA
Sbjct: 479 ITALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIA 538

Query: 532 QPPLYKVKKGKQEQYIKDEEAMNQ 555
            PPLYK+++G+   Y  +E  + +
Sbjct: 539 CPPLYKLERGRNHYYCYNERELQE 562



 Score = 95.9 bits (237), Expect = 6e-24
 Identities = 48/72 (66%), Positives = 56/72 (77%), Gaps = 2/72 (2%)

Query: 736 SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIET 795
           +IQR+KGLGEM P QLWETTMDPETR M +V IEDA  AD +FT LMGD+V+PRR FIET
Sbjct: 574 TIQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIET 633

Query: 796 NA--LKVANLDV 805
               L +A LD+
Sbjct: 634 YGPQLSMAALDI 645