Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 811 a.a., DNA gyrase subunit B from Sinorhizobium meliloti 1021

 Score =  901 bits (2328), Expect = 0.0
 Identities = 468/804 (58%), Positives = 588/804 (73%), Gaps = 10/804 (1%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64
           Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDN+IDEALAG+   + VT++
Sbjct: 15  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLN 74

Query: 65  EDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124
            D SV+V+D+GRGIPT++H EE VSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 75  PDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 134

Query: 125 ALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIEFHY 183
           ALS  + L I R GKIH  ++ HGV   PL V G+    TGT V F PS QTF+NIEF +
Sbjct: 135 ALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTFTPSEQTFSNIEFEF 194

Query: 184 DILAKRLRELSFLNSGVSIKLTDEREED-KKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
             L  RLREL+FLNSGV I LTD+R  D +++  MY+GG++AFV +L+R K P+ +K   
Sbjct: 195 GTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYLDRAKKPLVQKPVS 254

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
              E+ DGI+VEVAM WND + EN+ CFTNNIPQRDGGTH+AGFRGALTR + +Y D  G
Sbjct: 255 IRGEK-DGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGALTRQITSYADTSG 313

Query: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362
            +KK + + +GDD REGLTAV+SVKVPDPKFSSQTKDKLVSSEV+  VES +NE L+ +L
Sbjct: 314 ITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSVWL 373

Query: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422
            E+PS+AK +  K+++AA AREAARKARE+TRRKGALD++ LPGKLADC E+DPA SEL+
Sbjct: 374 EEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLADCSERDPAKSELF 433

Query: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG  IG+D
Sbjct: 434 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTSIGKD 493

Query: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542
           E+N DKLRYH IIIMTDADVDG+HIRTLLLTFF+RQMPELIERG++YIAQPPLYKV +GK
Sbjct: 494 EFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVARGK 553

Query: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602
             QY+KDE+A+  Y +++ ++ A L + A      G+ L +++        L+E +  RY
Sbjct: 554 SVQYLKDEKALEDYLISMGLEEASLEL-ASGEVRVGQDLREVINDALRLRSLMEGLHSRY 612

Query: 603 PYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNA-KEVGASQYSVLVEHNAELNVY 661
             +++ +      +N EL  ++   +     +  +L+   E     +   V     L   
Sbjct: 613 NRSVVEQAAIAGALNVELNGERDEYQLIAAEVARRLDVIAEETERGWEAAVTAEGGL--- 669

Query: 662 LPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFA 721
             K++    GV    +L   LI S +   +  L   L  +  A   ++R +  Q IS   
Sbjct: 670 --KLERMVRGVKEAAVLDMALIGSSDARHIDQLKARLKEVYGAPPVLRRRDGTQEISGPR 727

Query: 722 AALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTL 781
           A LD +    R+GL++QRYKGLGEMN +QLWETT+DP  R ++QV + DA  AD LF+ L
Sbjct: 728 ALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTDATDADGLFSRL 787

Query: 782 MGDQVEPRRAFIETNALKVANLDV 805
           MGD+VEPRR FI+ NAL VANLD+
Sbjct: 788 MGDEVEPRRDFIQENALSVANLDI 811