Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., DNA topoisomerase IV subunit B from Sinorhizobium meliloti 1021

 Score =  442 bits (1136), Expect = e-128
 Identities = 247/559 (44%), Positives = 355/559 (63%), Gaps = 17/559 (3%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           ++YD+S+I+VL+GL+ VR+RPGMYIG TD+   LHH+  EV+DNS+DEA+AG+   I V 
Sbjct: 45  SDYDASAIEVLEGLEPVRRRPGMYIGGTDE-KALHHLFAEVIDNSMDEAVAGHANFIDVN 103

Query: 63  IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
           +  D  ++V+D+GRGIP E HP+    S  EV+MTVLHAGGKFD  +Y+ SGGLHGVGVS
Sbjct: 104 LDADGYLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVS 163

Query: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTF-TNI 179
           VVNALS+ + + + R  +++ Q +  G+ Q  L  +G+   R GT VRF P  Q F  + 
Sbjct: 164 VVNALSDDLEVEVARNRRLYRQRFSRGIAQGGLEDLGDVHNRRGTRVRFHPDPQIFGPHA 223

Query: 180 EFHYDILAKRLRELSFLNSGVSIK-------LTDEREEDKKDHFMYEGGIQAFVTHLNRN 232
            F    L +  R  ++L  GV I+       L +  E   +  F + GG++ ++      
Sbjct: 224 RFEPARLFRMARSKAYLFGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAATLGK 283

Query: 233 KTPIHEKVFHFNQEREDGI-SVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 291
           +  +  ++F    E+  G  S+E A+ W  G Q+ I+ + N IP  +GGTH AG R ALT
Sbjct: 284 EFTVTREIFAGKSEKSGGHGSLEWAVTWYGGDQQ-IHSYCNTIPTPEGGTHEAGLRIALT 342

Query: 292 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 351
           + L NY +      K  A  + DD       ++SV + +P+F  QTKDKL + E +  VE
Sbjct: 343 KGLKNYAELT--QNKRAAIVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 400

Query: 352 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 411
           +A+ +    +LA+NP+EA  +   +++ A  R   RK +E++R+     L  LPGKLADC
Sbjct: 401 NALRDPFDHYLADNPAEAAKLLDWVVERAEERVRRRKEKEVSRKTAVRKLR-LPGKLADC 459

Query: 412 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 471
            +     +EL+IVEGDSAGGSAKQ RNR NQAILPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 460 AQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDL 519

Query: 472 ITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIA 531
           + ALGCG  R +Y  + LRY  IIIMTDADVDG+HI +LL+TFFY++MPELI  G++Y+A
Sbjct: 520 VQALGCGT-RSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLA 578

Query: 532 QPPLYKVKKGKQEQYIKDE 550
            PPLY++ +G +  Y +D+
Sbjct: 579 VPPLYRLSQGSKTLYARDD 597



 Score = 59.7 bits (143), Expect = 5e-13
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 732 RRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDA--VGADELFTTLMGDQVEPR 789
           R  + + R+KGLGEM P QL ETTMDP  R +++V I+D    G  +   +LMG + E R
Sbjct: 611 RGKVELGRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDVDFEGTRDAVDSLMGTKAEAR 670

Query: 790 RAFIETNALKVANLDV 805
             FI+  A+   NLD+
Sbjct: 671 FRFIQERAVFADNLDI 686