Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DNA topoisomerase IV subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  367 bits (941), Expect = e-105
 Identities = 213/567 (37%), Positives = 323/567 (56%), Gaps = 15/567 (2%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+N Y+S +I+VL GL+ V++RPGMY     D T  +H+  EV+DNS+DEALAG+   I 
Sbjct: 1   MTNLYNSDAIEVLNGLEPVKRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHASRID 56

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +  DNS+ V DDGRG+P ++HPEE +   E+I+T LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 57  VILQTDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 116

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETER--TGTTVRFWPSAQTFTN 178
           SVVNALS +V +T+ R  +++   + HG     L V G   R  TGT V FWP    F +
Sbjct: 117 SVVNALSRRVEITVRRDAQVYDMAFEHGDKVESLTVTGTCGRRNTGTRVHFWPEPSYFDS 176

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
             F    L   L+  + L  G+ IK T+++  +  + + +E G+  ++     +   + +
Sbjct: 177 PNFSITKLIHLLKAKAVLCPGLRIKFTNKQTGEVHEWY-FEAGLTDYLKSAVGDAPMLPQ 235

Query: 239 KVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 297
           + F       +  + + A+ W  +G +     + N IP   GGTH+ GFR  L  ++  +
Sbjct: 236 EPF-VGSFAGNNEAADWAITWLPEGGEYLAESYVNLIPTPLGGTHVNGFRQGLLESMREF 294

Query: 298 MDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEK 357
            +      +     S +D  +    ++S+K+ DP+F+ QTK+KL S +  + V   + + 
Sbjct: 295 CEFRNLIPRG-IKLSPEDIWDKTAFILSIKMQDPQFAGQTKEKLSSRQSAAFVSGIVRDA 353

Query: 358 LADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417
            + +L  +   A+ +    I  A+ R    KA +   RK       LPGKL DC  +DP 
Sbjct: 354 FSLYLNSHTDLAEMLAEMCISNAQKR---MKAAKKVARKKVTAGPALPGKLTDCSGQDPM 410

Query: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477
            SEL++VEGDSAGGSAKQ R+R+ QAI+PL+GKILN  +    ++L+SQEV  +  A+GC
Sbjct: 411 TSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDISVAIGC 470

Query: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYK 537
               D+ +  +LRY  + I+ DAD DG HI TLL   F +    L+ERG++YIA PPL++
Sbjct: 471 DPDSDDIS--ELRYGKVCILADADSDGLHIATLLCALFLKHYRVLVERGHVYIAMPPLFR 528

Query: 538 VKKGKQEQYIKDEEAMNQYQVALAMDG 564
           +  GK+  Y  DE         +A +G
Sbjct: 529 IDIGKEVYYALDESEKQGILDRIAAEG 555



 Score = 59.7 bits (143), Expect = 5e-13
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 724 LDWLIKESRRGL-SIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           LD +  E ++G   + R+KGLGEMNP QL ETTMDP TRR++Q+TI+D+     L   L+
Sbjct: 548 LDRIAAEGKKGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSDDTVALMDMLL 607

Query: 783 GDQVE-PRRAFIET 795
             +    R+ ++ET
Sbjct: 608 AKKRSGDRKTWLET 621