Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA topoisomerase (ATP-hydrolyzing) (RefSeq) from Shewanella amazonensis SB2B

 Score = 1212 bits (3136), Expect = 0.0
 Identities = 593/803 (73%), Positives = 678/803 (84%), Gaps = 1/803 (0%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           N YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAG+C +I +T
Sbjct: 4   NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEITIT 63

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           IH D SVSV DDGRGIP  +HPEE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 64  IHVDGSVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEFH 182
           VNALS+K+ LTI R GK+H Q Y HGVP AP+ VVG+  +TGT VRFWPS +TF++  FH
Sbjct: 124 VNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKVVGDATKTGTEVRFWPSEETFSDTLFH 183

Query: 183 YDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
           +DILAKR+RELSFLNSGV I+L DER+ +K + F YEGGI AFV +LNRNKTP+++ +FH
Sbjct: 184 FDILAKRVRELSFLNSGVGIRLVDERD-NKDEFFKYEGGISAFVEYLNRNKTPVNKDIFH 242

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
           F QEREDGI+VEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTR LNNYM+ EG
Sbjct: 243 FAQEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEAEG 302

Query: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362
           ++KK +   +GDDAREGLTAV+SVKVPDPKFSSQTKDKLVSSEVKSAVE  M EKL D+L
Sbjct: 303 YNKKNKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYL 362

Query: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422
            ENP +AK +  KIIDAARAREAARKAREMTRRKGALDL GLPGKLADCQEKDP LSE+Y
Sbjct: 363 LENPGDAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIY 422

Query: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482
           IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542
           EY+PDK RYH IIIMTDADVDGSHIRTLLLTFF+RQMPELIERGY+YIAQPPLYKVKKGK
Sbjct: 483 EYDPDKTRYHYIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKKGK 542

Query: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602
            EQY+KD+ A+ ++    A+DGA +H +  AP ++GEPLEKLV QY     ++ R+  RY
Sbjct: 543 HEQYLKDDPALTEFLTTGALDGASIHPSQGAPGMSGEPLEKLVNQYREVEGIIARLDLRY 602

Query: 603 PYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYL 662
           P  +   ++Y P ++ ++ AD+A V+AW    V  L  +E     Y+ + EH+ E  VY+
Sbjct: 603 PEVLTDRMLYHPVLSNDILADQAKVQAWCDAFVADLVERESSGVLYNAVAEHDPERQVYV 662

Query: 663 PKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAA 722
           PK+ +R HG+ HEYL S D   S +Y K+  L+ ALDGLIE G +++RGE+V+P++SF  
Sbjct: 663 PKVTLRRHGIDHEYLFSYDFFQSSDYRKMGALANALDGLIEEGGYVQRGEKVKPVTSFIE 722

Query: 723 ALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           ALDWL+ ES+RGL IQRYKGLGEMNP+QLWETTMDPE+RRM+QVTIEDA+ AD+LFT LM
Sbjct: 723 ALDWLVGESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIAADQLFTCLM 782

Query: 783 GDQVEPRRAFIETNALKVANLDV 805
           GDQVEPRR FIE NAL VANLDV
Sbjct: 783 GDQVEPRRDFIEANALNVANLDV 805