Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

 Score =  421 bits (1083), Expect = e-122
 Identities = 238/562 (42%), Positives = 342/562 (60%), Gaps = 15/562 (2%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64
           Y + SI+VL+GL+ VR+RPGMYIG TD+   LHH+V E++DN++DEA+AGY + I + + 
Sbjct: 17  YTARSIEVLEGLEPVRRRPGMYIGGTDE-RALHHLVAEILDNAMDEAVAGYAQVIDIDLA 75

Query: 65  EDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123
            D SV V D+GRGIP + HP     SA EVI+T LH+GGKF  ++YKVSGGLHGVG+SVV
Sbjct: 76  VDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVV 135

Query: 124 NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTF-TNIEF 181
           NALS+ + + + R   + +Q +  G P  PL  +G    R GT VRF P A+ F     F
Sbjct: 136 NALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRARF 195

Query: 182 HYDILAKRLRELSFLNSGVSIK-------LTDEREEDKKDHFMYEGGIQAFVTHLNRNKT 234
              +L +  R  ++L  GV I+       L D+     +D F +  G+  ++ H   N+ 
Sbjct: 196 KPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALANRP 255

Query: 235 PIHEKVFHFNQEREDGI-SVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRT 293
            +  + F       D + +VE A+ W +  +     + N IP  +GGTH AG R ALTR 
Sbjct: 256 LVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALTRG 315

Query: 294 LNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353
           L ++ +  G +KK  AA + +D   G   + S+ + DP+F  QTK+KL S E    VE A
Sbjct: 316 LRSFAEMSG-NKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVEQA 374

Query: 354 MNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413
           + +    +L   P  A  + +  ++ A  R   R+A+E T RK A     LPGKL+DC  
Sbjct: 375 LRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKE-TSRKTATKKLRLPGKLSDCTR 433

Query: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473
                +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  DK+  +QE++ L  
Sbjct: 434 STRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAE 493

Query: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533
           ALGCG  R  ++ + LRY  ++IMTDADVDG+HI +LL+TFF+R+MP L+  G++Y+A P
Sbjct: 494 ALGCGT-RGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMP 552

Query: 534 PLYKVKKGKQEQYIKDEEAMNQ 555
           PLY++ +G    Y +D+   +Q
Sbjct: 553 PLYRLTQGGTSVYARDDAHKDQ 574



 Score = 56.2 bits (134), Expect = 6e-12
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 9/80 (11%)

Query: 735 LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTI---------EDAVGADELFTTLMGDQ 785
           + I R+KGLGEM P QL ETTM   TR++++VT+         EDA    +L   LMG +
Sbjct: 586 VEISRFKGLGEMPPAQLRETTMAYATRQLLRVTVPGGKTEEDREDARETAKLVEELMGRK 645

Query: 786 VEPRRAFIETNALKVANLDV 805
            E R  FI+ NA    NLD+
Sbjct: 646 PELRFRFIQENARFAENLDI 665