Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

 Score =  859 bits (2220), Expect = 0.0
 Identities = 459/809 (56%), Positives = 582/809 (71%), Gaps = 24/809 (2%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64
           Y + SIKVLKGL+AVRKRPGMYIGDTDDG+GLHHMV+EVVDN IDEALAG+   +VV IH
Sbjct: 11  YGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVVVKIH 70

Query: 65  EDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124
            D+SVSV+D+GRGIP  +H EE VSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 71  ADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVN 130

Query: 125 ALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNIEFHY 183
           ALS+ + L I+R GK H   +  G     L VVG+  ++TGT VRF  S  TF+N+E+ +
Sbjct: 131 ALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLASTDTFSNLEYLF 190

Query: 184 DILAKRLRELSFLNSGVSIKLTDEREEDKKD-HFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
           + L KRLREL+FLNSGV I L DER  ++ +    YEGG++ FV +L+R+K+P+ E   +
Sbjct: 191 ETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIY 250

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
              +R++ I VEVAM WND + E +  FTNNIPQRDGGTH+AGFRGALTRT+NNY    G
Sbjct: 251 ITGDRDE-IGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSG 309

Query: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362
            +KK + + +GDDAREGLT V+SVKVPDPKFSSQTKDKLVSSEV+  VES +NEKLA++ 
Sbjct: 310 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWF 369

Query: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422
            ENP++AK +  KII+AA AREAARKARE+TRRK A+D+  L GKL DC EKDP+ +E++
Sbjct: 370 EENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVF 429

Query: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482
           +VEGDSAGGSA+ GR+R  QAILPL+GKILNVE+ARFD+ML SQE+  L+ ALG GIGRD
Sbjct: 430 LVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRD 489

Query: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542
           E+N DKLRYH I+IMTDADVDG+HIRTLLLTFFYRQMPELIE GY+YIAQPPLYKV +GK
Sbjct: 490 EFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVSRGK 549

Query: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602
            E Y+KD+ A+++Y +   +DGA L + +    L G+ L ++V +     ++++     Y
Sbjct: 550 SEVYLKDQAALDEYLINQGVDGAVLKLGS-GEELVGQDLARVVDEARQLKRVLDAFPTHY 608

Query: 603 PYAMLHEL----IYVP-RINAEL--CADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHN 655
           P  +L +      +VP  ++A+L   ADK A     QRL + +  +     +  +  +H 
Sbjct: 609 PRHILEQAAVAGAFVPGAVDADLQGVADKVA-----QRL-DLIALEYERGWRGRITQDHG 662

Query: 656 AELNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQ 715
             L+  L        GV     L   ++ S E  K    + +L     A A + R +R Q
Sbjct: 663 IRLSRIL-------RGVEELRTLDGPMLRSGEARKTGSFTNSLQETYGATATLVRRDRSQ 715

Query: 716 PISSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGAD 775
            I      L  +++E  +GL++QRYKGLGEMNPDQLWETT+DP+ R ++QV +ED V AD
Sbjct: 716 AIHGPLGLLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEAD 775

Query: 776 ELFTTLMGDQVEPRRAFIETNALKVANLD 804
           +LFT LMGD VEPRR FI+ NAL V NLD
Sbjct: 776 DLFTKLMGDVVEPRREFIQKNALSVENLD 804