Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., DNA topoisomerase 4 subunit B from Phaeobacter inhibens DSM 17395

 Score =  412 bits (1060), Expect = e-119
 Identities = 244/561 (43%), Positives = 347/561 (61%), Gaps = 20/561 (3%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           S+ YD+SSI+VL+GL+ VR+RPGMYIG TD+   LHHMV E++DNS+DEA+AG+   I V
Sbjct: 11  SDTYDASSIEVLEGLEPVRQRPGMYIGGTDE-RALHHMVAEILDNSMDEAVAGHANRIEV 69

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           T+H D +V++SD+GRGIP + HP+    SA EVI+  LHAGGKF   +Y+ SGGLHGVG 
Sbjct: 70  TLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGS 129

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNI 179
           SVVNALS+ +++ + +  ++  Q +  G+PQ P+  +G    + GT V F    Q F + 
Sbjct: 130 SVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIFGSH 189

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLT---DEREEDKKDHFMYEGGIQAFVTHLNRNKTPI 236
            F    L   +R  ++L SGV I+     D+ E   +  F + GG++ ++T +    +  
Sbjct: 190 RFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYLTEVLGKSSVY 249

Query: 237 HEKVFHFNQEREDGIS----VEVAMQWN---DGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
            E+ F    E  +  +    VE A+ W    DGF ++ YC  N +P  +GGTH+AGF  A
Sbjct: 250 AEQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQS-YC--NTVPTPEGGTHVAGFWAA 306

Query: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
           + + +  Y D  G +KKA + T  +D   G  A+VS  + DP F  QTKD+L +      
Sbjct: 307 ILKGIKAYGDLVG-NKKAASITR-EDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAAKM 364

Query: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
           VE+++ +   ++LA +   A  +   ++  A  R   RK  + T+RK A     LPGKL 
Sbjct: 365 VENSVRDHFDNWLAADTKSAGAILDFLVLRAEER-LRRKQEKETQRKSATKKLRLPGKLT 423

Query: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469
           DC  KD A +EL+IVEGDSAGGS K  RNR NQA+LPLKGKILNV  A  +K+ ++ E+ 
Sbjct: 424 DCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEIR 483

Query: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529
            L  ALG G G  ++N D LRY  IIIMTDADVDG+HI +LL+TFF+ QM  LI+ G++Y
Sbjct: 484 DLCEALGVGTG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 530 IAQPPLYKVKKGKQEQYIKDE 550
           +A PPL+++ +G +  Y  DE
Sbjct: 543 LACPPLFRLTQGARRVYCLDE 563



 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 735 LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTI-EDAVG-ADELFTTLMGDQVEPRRAF 792
           + + R+KGLGEM+   L ETTMDP TR++++VTI ED  G   EL   LMG + E R  +
Sbjct: 580 IDVSRFKGLGEMDAKDLKETTMDPTTRKLIRVTIDEDEPGETGELVEQLMGKKPELRYQY 639

Query: 793 IETNALKVANLDV 805
           I+ NA  V  LDV
Sbjct: 640 IQENAKFVEELDV 652