Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DNA topoisomerase IV subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  387 bits (995), Expect = e-112
 Identities = 222/556 (39%), Positives = 326/556 (58%), Gaps = 21/556 (3%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+N Y S +I+VL GLD V++RPGMY     D T  +H+  EV+DNS+DEALAG+   I 
Sbjct: 1   MTNQYTSDAIEVLNGLDPVKRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHATRID 56

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +H+DNS+ V DDGRG+P ++HPEE +   E+I+T LHAGGKF +N+Y+ SGGLHGVG+
Sbjct: 57  VILHKDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNNNYQFSGGLHGVGI 116

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETER--TGTTVRFWPSAQTFTN 178
           SVVNALS +V +T+ R G+++   + HG     L V G   R  TGT V FWP+A  F +
Sbjct: 117 SVVNALSNRVEITVRRSGQVYEMAFEHGDKVEELTVTGTCGRRNTGTRVHFWPTASYFDS 176

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
           + F    L   LR  + L  G+ IK T+++  D ++ + YE G+  ++    +    + E
Sbjct: 177 VNFSIPKLIYLLRAKAVLCPGLRIKFTNKQTGDVEE-WCYESGLTDYLKSSTQGALTLPE 235

Query: 239 KVFHFNQEREDGISVEVAMQW----NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTL 294
           + F       +  +V+ A+ W     D   E+   + N IP   GGTH+ GFR  L   +
Sbjct: 236 EPF-IGSMAGNTEAVDWAITWLPEGGDSLNES---YVNLIPTPLGGTHVNGFRQGLLEAM 291

Query: 295 NNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 354
             + +      +     S +D  +  + ++S+K+ DP+F+ QTK+KL S +  + V   +
Sbjct: 292 REFCEFRNLIPRG-IKLSPEDIWDRSSFILSIKMQDPQFAGQTKEKLSSRQSAAFVSGIV 350

Query: 355 NEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEK 414
            +  + +L  +  +A+ +    I  A+ R    KA +   RK       LPGKL DC  +
Sbjct: 351 RDAFSLWLNTHTDQAEALAEMCISNAQKR---LKAAKKVARKKVTSGPALPGKLTDCSGQ 407

Query: 415 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474
           DP   EL++VEGDSAGGSAKQ R+R+ QAI+PL+GKILN  +    ++L+SQEV  +  A
Sbjct: 408 DPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDISVA 467

Query: 475 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPP 534
           +GC    D  +  +LRY  I I+ DAD DG HI TLL   F +    L+E+G+IY+A PP
Sbjct: 468 IGC--DPDSNDISELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEKGHIYVAMPP 525

Query: 535 LYKVKKGKQEQYIKDE 550
           L++V  GK+  Y  DE
Sbjct: 526 LFRVDVGKEVYYALDE 541



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 724 LDWLIKESRRG-LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           LD +  E ++G + + R+KGLGEMNP QL ETTMDP TRR++Q+TI+DA     +   L+
Sbjct: 548 LDRISAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEDTLAIMDMLL 607

Query: 783 GDQVE-PRRAFIET 795
             +    R+ ++ET
Sbjct: 608 AKKRSGDRKTWLET 621