Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase, B subunit (RefSeq) from Shewanella loihica PV-4

 Score = 1204 bits (3115), Expect = 0.0
 Identities = 590/803 (73%), Positives = 682/803 (84%), Gaps = 1/803 (0%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           N+YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYC D+++T
Sbjct: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDVIIT 63

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           IH D SVSV DDGRGIP  +HPEE VSAA+VIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 64  IHADGSVSVKDDGRGIPVAIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEFH 182
           VNALSEK+ LTI R GK++ Q Y  G P AP+A +G+   TGT +RFWPSA+TF++  FH
Sbjct: 124 VNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATNTGTEIRFWPSAETFSDTLFH 183

Query: 183 YDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
           +DILAKR+RELSFLNSGV I+L DER+ +K + F YEGGI AFV +LN NKTP+++++FH
Sbjct: 184 FDILAKRVRELSFLNSGVGIRLIDERD-NKDEFFKYEGGISAFVDYLNLNKTPVNKEIFH 242

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
           F QEREDGI+VEVAMQWNDGFQENI+CFTNNIPQRDGGTHLAGFR ALTR LN+YMDKEG
Sbjct: 243 FVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRNLNSYMDKEG 302

Query: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362
           F+KK + + +GDDAREGLTAV+SVKVPDPKFSSQTKDKLVSSEVKSAVE  M EKL D+L
Sbjct: 303 FNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYL 362

Query: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422
            ENP+EAK +  KIIDAARAREAARKAREMTRRKGALDL GLPGKLADCQEKDPALSE+Y
Sbjct: 363 LENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIY 422

Query: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482
           IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542
           EY+PDK RYHNI+IMTDADVDGSHIRTLLLTFF+RQMPELIERGY++IAQPPLYKVKKGK
Sbjct: 483 EYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVFIAQPPLYKVKKGK 542

Query: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602
           QEQY+KD+ A+ +Y   LA+DG E+H + DAPA++G PLEKLV QY     + +R+ +R+
Sbjct: 543 QEQYLKDDPALTEYLTNLALDGGEIHPSQDAPAMSGAPLEKLVYQYREVEAIFDRLEQRF 602

Query: 603 PYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYL 662
           P  +   ++Y P ++ ++ AD+A V+ W    V  L   E G   +S     + E  VYL
Sbjct: 603 PIMLTERMLYQPGLSNDILADEAKVKQWCDNYVAALTEAESGGFIFSAEAFLDPERQVYL 662

Query: 663 PKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAA 722
           PK+ VR HG+   YL S D + S +Y ++  L+EAL+GLIE G ++KRGER++ ISSF  
Sbjct: 663 PKVTVRKHGIDTHYLFSYDFLQSSDYQRMTALAEALEGLIEEGGYVKRGERMKEISSFVD 722

Query: 723 ALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           ALDWL+ +S+RGL IQRYKGLGEMNP+QLWETTMDPE+RRM++VTIEDA+ AD+LFT LM
Sbjct: 723 ALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAIAADQLFTCLM 782

Query: 783 GDQVEPRRAFIETNALKVANLDV 805
           GDQVEPRR FIE+NAL VANLDV
Sbjct: 783 GDQVEPRRDFIESNALNVANLDV 805