Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 830 a.a., DNA gyrase, B subunit from Dechlorosoma suillum PS

 Score =  923 bits (2385), Expect = 0.0
 Identities = 473/822 (57%), Positives = 601/822 (73%), Gaps = 30/822 (3%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64
           Y  SSI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDNSIDEALAG+C DI VTIH
Sbjct: 18  YGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDITVTIH 77

Query: 65  EDNSVSVSDDGRGIPTEMHPEEKV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
            DNS+SV+D+GRGIPT +  ++K     SAAE+ +T LHAGGKF+ NSYKVSGGLHGVGV
Sbjct: 78  ADNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGV 137

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ------------APLAVVGETERTGTTVR 168
           S VNALS+ + LTI R GK H   ++ GVP             +PL V+G+T++ GT V 
Sbjct: 138 SCVNALSKWLRLTIRRDGKRHFIEFNRGVPVERVIEVRDGFEVSPLKVLGDTDKRGTEVH 197

Query: 169 FWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTH 228
           F    + F  +EFHY+ILAKRLRELSFLN+GVSI+L D+R   K++ F + GG+Q+FV +
Sbjct: 198 FLADDEIFGTVEFHYEILAKRLRELSFLNNGVSIRLVDQRN-GKEELFAFAGGVQSFVEY 256

Query: 229 LNRNKTPIHEKVFHFNQEREDG-----ISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 283
           +NR K+ +H  +F+   E + G     I VEVAMQWND +QE + CFTNNIPQ DGGTHL
Sbjct: 257 INRTKSVLHPSIFYSAGEAKVGDTGVTIGVEVAMQWNDSYQEQVLCFTNNIPQSDGGTHL 316

Query: 284 AGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 343
            G R A+TR +N Y+++   +KKA+   +GDD REGL  V+SVK+PDPKF+SQTK KLVS
Sbjct: 317 TGLRAAMTRIINKYIEENEIAKKAKVEITGDDMREGLACVLSVKMPDPKFASQTKMKLVS 376

Query: 344 SEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAG 403
           SE + AVE  +  KL +FL E P +AK +C KI++AARAR+AARKAREMTRRKG LD  G
Sbjct: 377 SEARPAVEEVVAAKLTEFLLERPVDAKTICGKIVEAARARDAARKAREMTRRKGILDGVG 436

Query: 404 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 463
           LPGKLADCQEKDP   ELY+VEGDSAGGSAKQGR+RK QAILPLKGKILNVEKARFDK++
Sbjct: 437 LPGKLADCQEKDPTQCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLI 496

Query: 464 SSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELI 523
           SSQE+ATLITALG GIG+DEY P+KLRYH IIIMTDADVDG+HIRTLLLTFFYRQMPEL+
Sbjct: 497 SSQEIATLITALGTGIGKDEYKPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELV 556

Query: 524 ERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEK 583
           ERG+IYIAQPPLYKVK GK E+Y+KD+    Q+ + +AM+G EL   A A  ++G  LE 
Sbjct: 557 ERGHIYIAQPPLYKVKHGKTERYLKDDHEYQQFLLQMAMEGTELLPRAGAEPISGAALES 616

Query: 584 LVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEV 643
           L ++Y  A  ++ R+S      +LH L++    N EL  D  A    +  L+ ++++  +
Sbjct: 617 LAREYLLAEAVINRLSNHINPEVLHALVH---HNLELKLDDEAAAKASAALLAKVSSDGI 673

Query: 644 GASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIE 703
                 V   +N     +  +++   HG      +  D + S +Y +L   +E L+GL  
Sbjct: 674 -----DVFAHYNEAQESWQVRMEKMHHGNRKVSSIDEDFLRSGDYLQLRKTAELLNGLFG 728

Query: 704 AGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRM 763
            G  I+RGE+   ++ FA+ + WL+ E  +G+S QRYKGLGEMNP+QLWETTMDP  RR+
Sbjct: 729 PGGLIQRGEKKMAVADFASTMTWLLNEVEKGISKQRYKGLGEMNPEQLWETTMDPNVRRL 788

Query: 764 MQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 805
           ++V I+DA+GADE+FTTLMG+ VEPRR FIE+NAL+  N+DV
Sbjct: 789 LRVGIDDAIGADEVFTTLMGELVEPRRNFIESNALRAQNIDV 830