Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 675 a.a., DNA gyrase (subunit B) GyrB (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) from Mycobacterium tuberculosis H37Rv

 Score =  540 bits (1392), Expect = e-158
 Identities = 285/568 (50%), Positives = 372/568 (65%), Gaps = 36/568 (6%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           + Y ++SI +L+GL+AVRKRPGMYIG T +  GLHH+++EVVDN++DEA+AGY   + V 
Sbjct: 10  DEYGAASITILEGLEAVRKRPGMYIGSTGE-RGLHHLIWEVVDNAVDEAMAGYATTVNVV 68

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           + ED  V V+DDGRGIP   H    +   +V+MT LHAGGKFD ++Y +SGGLHGVGVSV
Sbjct: 69  LLEDGGVEVADDGRGIPVATHASG-IPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSV 127

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEFH 182
           VNALS ++ + I R G   SQ Y    P   L     T++TG+TVRFW     F   E+ 
Sbjct: 128 VNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQGAPTKKTGSTVRFWADPAVFETTEYD 186

Query: 183 YDILAKRLRELSFLNSGVSIKLTDER-------------------------------EED 211
           ++ +A+RL+E++FLN G++I LTDER                                + 
Sbjct: 187 FETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKV 246

Query: 212 KKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFT 271
           K   F Y GG+  FV H+NR K  IH  +  F+  +  G  VE+AMQWN G+ E+++ F 
Sbjct: 247 KSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSG-KGTGHEVEIAMQWNAGYSESVHTFA 305

Query: 272 NNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDP 331
           N I   +GGTH  GFR ALT  +N Y       K      +GDD REGL AV+SVKV +P
Sbjct: 306 NTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEP 365

Query: 332 KFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKARE 391
           +F  QTK KL ++EVKS V+   NE+L  +   NP++AK V +K + +A+AR AARKARE
Sbjct: 366 QFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARE 425

Query: 392 MTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 451
           + RRK A D+ GLPGKLADC+  DP  SELY+VEGDSAGGSAK GR+   QAILPL+GKI
Sbjct: 426 LVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKI 485

Query: 452 LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLL 511
           +NVEKAR D++L + EV  +ITALG GI  DE++  KLRYH I++M DADVDG HI TLL
Sbjct: 486 INVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQHISTLL 544

Query: 512 LTFFYRQMPELIERGYIYIAQPPLYKVK 539
           LT  +R M  LIE G++++AQPPLYK+K
Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLK 572



 Score = 92.4 bits (228), Expect = 7e-23
 Identities = 53/107 (49%), Positives = 67/107 (62%), Gaps = 19/107 (17%)

Query: 699 DGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDP 758
           DGL+EAG  +K G+++              KE      IQRYKGLGEM+  +LWETTMDP
Sbjct: 588 DGLLEAG--LKAGKKIN-------------KED----GIQRYKGLGEMDAKELWETTMDP 628

Query: 759 ETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 805
             R + QVT++DA  ADELF+ LMG+ V+ RR+FI  NA  V  LDV
Sbjct: 629 SVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV 675