Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1194 bits (3088), Expect = 0.0
 Identities = 585/803 (72%), Positives = 674/803 (83%), Gaps = 1/803 (0%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           N+YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAG+C DI +T
Sbjct: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITIT 63

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           IH D SVSV DDGRGIP  +H EE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 64  IHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEFH 182
           VNALS+K+ LTI R GK+H Q Y HGVP AP+  +G+  +TGT +RFWPS QTF+N+EFH
Sbjct: 124 VNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATKTGTEIRFWPSEQTFSNVEFH 183

Query: 183 YDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
           ++ILAKR+RELSFLNSGV I+L DER+ +K + F YEGGI AFV +LNRNKTP+++ VFH
Sbjct: 184 FEILAKRVRELSFLNSGVGIRLVDERD-NKNEFFKYEGGISAFVDYLNRNKTPVNKDVFH 242

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
           F QER+DGI+VEVAMQWNDG+QENI+CFTNNIPQRDGGTHLAGFR ALTR LNNYM+ EG
Sbjct: 243 FMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEG 302

Query: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362
           ++KK +   +GDDAREGLTAV+SVKVPDPKFSSQTKDKLVSSEVK+AVE  M EKL D+L
Sbjct: 303 YNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYL 362

Query: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422
            ENP++AK +  KI+DAARAREAARKAREMTRRKGALDL GLPGKLADCQEKDP LSE+Y
Sbjct: 363 LENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIY 422

Query: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482
           IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD
Sbjct: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482

Query: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542
           EYNPDK RYHNIIIMTDADVDGSHIRTLLLTFF+RQMPELIERGY+YIAQPPL+KVKKGK
Sbjct: 483 EYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGK 542

Query: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602
           QEQY+KDE A+ QY    A+DG  ++ +  AP ++GEPLE+LV QY     +V R+ +RY
Sbjct: 543 QEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQRY 602

Query: 603 PYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYL 662
           P  + + ++Y P I+ ++ AD+A ++ W    + +L   E     YS     + E  VYL
Sbjct: 603 PTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKVYL 662

Query: 663 PKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAA 722
           PKI +R HG+   YL S D   S +Y ++A L  AL+GLIE G +++RG+RV+ + SF  
Sbjct: 663 PKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEVGSFIE 722

Query: 723 ALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           ALDW I E++RGL IQRYKGLGEMNP+QLWETTMDPE+RRM+QVTI+DAVGAD+LFT LM
Sbjct: 723 ALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLM 782

Query: 783 GDQVEPRRAFIETNALKVANLDV 805
           GDQVEPRR FIE NAL VANLDV
Sbjct: 783 GDQVEPRREFIEANALNVANLDV 805