Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 798 a.a., DNA gyrase, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  723 bits (1867), Expect = 0.0
 Identities = 407/818 (49%), Positives = 528/818 (64%), Gaps = 41/818 (5%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           NNY + SI +L+GL AVRKRP MYIG TD   GLHH+V+EVVDNSIDEA+AG+C  +VV 
Sbjct: 7   NNYTADSITILEGLSAVRKRPAMYIGSTD-ARGLHHLVYEVVDNSIDEAMAGFCSKVVVK 65

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           +H DNSV+VSD+GRGIP +MHP+E   A EV+MT LHAGGKFD+N+YKVSGGLHGVGVS 
Sbjct: 66  LHLDNSVTVSDNGRGIPVDMHPKEGRPAVEVVMTKLHAGGKFDNNAYKVSGGLHGVGVSC 125

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIEFH 182
           VNALSE + + + R G+ + Q Y  GVPQ  L V+G +E  GTTVRF P  + F   +F 
Sbjct: 126 VNALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLGASEGHGTTVRFKPDEEIFETNQFS 185

Query: 183 YDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
           Y+ L KR  ELS+LN G+ I+  DER  +    F  EGGI+ FV  LN  +T IH  V  
Sbjct: 186 YETLRKRFEELSYLNRGLEIEFIDERSGESHTFFA-EGGIRQFVKDLNSGETGIHPIVA- 243

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
             + + DG+ V+ A+Q+N G++EN+  F NNI  ++GGTHLAGF+ ALTR +N Y+  + 
Sbjct: 244 -GEGKTDGVVVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAINGYVKGQA 302

Query: 303 -FSKKAQA-ATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 360
             +KK +  A SGDD REGLTAVVSVK+P P+F  QTK KL +SE+   V   + ++L  
Sbjct: 303 DLTKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIVAGIVYDRLNV 362

Query: 361 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE 420
              ENP + + +  K +DAARAR+AAR+A+E+ RRKGAL    LPGKLADCQ KDPALSE
Sbjct: 363 HFEENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQSKDPALSE 422

Query: 421 LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 480
           L+IVEGDSAGGSAKQGR+   QAILPL+GKILN E+ RFDKML+++EV  LITA+G GIG
Sbjct: 423 LFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALITAMGAGIG 482

Query: 481 RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKK 540
            D+ + DKLRYH I+IMTDADVDG+HIRTLLLTFF+RQ  +LIE GY+YIAQPPLY+   
Sbjct: 483 EDDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYIAQPPLYRAHN 542

Query: 541 GKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKL---VQQYNAAIKLVER 597
            + E++IKD+  +N + +    +  E+       +  G  + +L   ++   A I+ VE 
Sbjct: 543 SRMERFIKDDAELNNFLLTRVSEDVEVRTPGGC-SFKGTDIVRLMRSIETVAARIRDVET 601

Query: 598 --MSRRYPYAMLHELIYVPRINAELCA--DKAAVEAWT----QRLVEQLNAKEVGASQYS 649
             +SR      L  L Y  RI  E     D   +  W       +  +L + + G   + 
Sbjct: 602 AGISRE---LFLGFLEYGERITPEWFEQHDGNGLRPWLAGRGYSMTAELESGDEGDRTFV 658

Query: 650 VLVEHNAELNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFI- 708
           V    N                  H   + A+   S+ Y    D  EA+       +F  
Sbjct: 659 VFENTNG-----------------HRTRIGAEFFGSRMYRSSWDALEAIRSECGGLSFTL 701

Query: 709 -KRGERVQPISSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVT 767
            ++GE V     F      + +E+RRGL+IQRYKGLGEMNP+QLW TTM+PE R ++QV+
Sbjct: 702 DRKGETVGEGDMFDLQ-RMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVS 760

Query: 768 IEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 805
           IEDA  A + F  LMGD+VEPRR FI  NAL V  LD+
Sbjct: 761 IEDAEEASDAFEQLMGDRVEPRREFIVRNALAVQELDI 798