Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DNA topoisomerase IV subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  376 bits (965), Expect = e-108
 Identities = 221/558 (39%), Positives = 322/558 (57%), Gaps = 25/558 (4%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+N Y S +I+VL GLD V++RPGMY     D T  +H+  EV+DNS+DEALAG+   I 
Sbjct: 1   MTNQYTSDAIEVLNGLDPVKRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHATKIE 56

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +H DNS+ V+DDGRG+P ++HPEE +   E+I+T LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 57  VVLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 116

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETER--TGTTVRFWPSAQTFTN 178
           SVVNALS +V +T+ R G+++   + +G     L V G   R  TGT V FWP A  F +
Sbjct: 117 SVVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDS 176

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
             F    L   LR  + L  G+ IK T++   +  + + YE G+  ++     +   + E
Sbjct: 177 ANFSNSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHEWY-YESGLTDYLKAAVGDNLMLPE 235

Query: 239 KVF--HFNQEREDGISVEVAMQW----NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTR 292
           + F   F  + E   + + A+ W     D   E+   + N IP   GGTH+ GFR  L  
Sbjct: 236 EPFIGSFKGQIE---AADWAITWLPEGGDAINES---YVNLIPTPLGGTHVNGFRQGLLE 289

Query: 293 TLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 352
           ++  + +      +     S +D  +    ++SVK+ DP+F+ QTK+KL S +  + V  
Sbjct: 290 SMREFCEFRNLIPRG-IKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348

Query: 353 AMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQ 412
            + +  + +L  N   A+++    I+ A+ R    KA +   RK       LPGKL DC 
Sbjct: 349 IVRDAFSLWLNSNTELAESLADMCINNAQRR---LKASKKVARKKVTSGPALPGKLTDCS 405

Query: 413 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 472
            +DP   EL++VEGDSAGGSAKQ R+R+ QAI+PL+GKILN  +    ++L+SQEV  + 
Sbjct: 406 GQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDIS 465

Query: 473 TALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQ 532
            A+GC    D  +  +LRY  I I+ DAD DG HI TLL   F +    L+E+G++YIA 
Sbjct: 466 VAIGC--DPDSNDISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAM 523

Query: 533 PPLYKVKKGKQEQYIKDE 550
           PPL+++  GK   Y  DE
Sbjct: 524 PPLFRIDIGKDVYYALDE 541



 Score = 65.9 bits (159), Expect = 7e-15
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 724 LDWLIKESRRG-LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           LD +  E+++G + + R+KGLGEMNP QL ETTMDP TRR++Q+TI+D    D L   L+
Sbjct: 548 LDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEETDSLMDMLL 607

Query: 783 GDQVEPRR 790
             +  P R
Sbjct: 608 AKKRSPDR 615