Pairwise Alignments

Query, 363 a.a., DNA replication and repair protein RecF from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., DNA replication and repair protein RecF (RefSeq) from Shewanella loihica PV-4

 Score =  335 bits (860), Expect = 9e-97
 Identities = 167/359 (46%), Positives = 234/359 (65%), Gaps = 6/359 (1%)

Query: 1   MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60
           M LSRL I  FRNI +  ++L  G N + G NGSGKTS+LEAI+ LG GRSF+S L+ R+
Sbjct: 1   MSLSRLHIDSFRNIASAQLQLGDGLNLIYGQNGSGKTSILEAIFFLGMGRSFRSHLSQRV 60

Query: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120
           IQN+  +L +  +     L   + E  +G+ + R G TEVK+ G+  ++L+ LA+ LP+Q
Sbjct: 61  IQNDQDKLTLFAQ-----LEQGEQETKIGLRRYRSGETEVKMNGEKVKRLSTLAETLPIQ 115

Query: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELS 180
           +I PE F LL +GPK RR FIDWG FHT+ +F+ AW   +R+ K RN +LKS   Y+++ 
Sbjct: 116 VITPESFSLLFEGPKSRRQFIDWGAFHTDKSFYTAWANVRRILKHRNQMLKSETPYQQIQ 175

Query: 181 YWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSILE 240
           +WD+EL R AE + + R+ YV  L    + +   FLP+ D+ + + RGW+    YQ++L+
Sbjct: 176 FWDKELVRYAEIVTEIRKRYVGSLNERLKGIIEEFLPQVDVKVSFTRGWDSKTDYQTLLQ 235

Query: 241 KNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSRGQLKLMVCALRVAQGQHLTELTGK 300
             + RD   G+T SGP+KADLR++V   PV+D LSRGQLKL+VCALR+AQG+ L +   K
Sbjct: 236 AQYPRDLAAGHTASGPHKADLRLRVGTLPVQDALSRGQLKLLVCALRIAQGKLLKQQIDK 295

Query: 301 QCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS-KTFHVAHG 358
             IYL+DD  SELD+  RQ L   L  TGAQVFV++I  + + D L+    K FHV  G
Sbjct: 296 NSIYLVDDLPSELDARHRQLLLQQLSDTGAQVFVTAIEPAAIMDSLNTPPVKVFHVEQG 354