Pairwise Alignments

Query, 363 a.a., DNA replication and repair protein RecF from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., DNA replication and repair protein RecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  328 bits (842), Expect = 1e-94
 Identities = 165/359 (45%), Positives = 230/359 (64%), Gaps = 6/359 (1%)

Query: 1   MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60
           M L RL I  FRNI+   +  S G N + G NGSGKTS+LEAIY LG GRSF+S L+ R+
Sbjct: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120
           I N+  +L +       +L+  + +  +G+ + R G TEVKI G+  ++L+ LA+ LP+Q
Sbjct: 61  INNDQDKLTLFA-----TLNLPRGDSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQ 115

Query: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELS 180
           +I PE F LL +GPK RR FIDWG FHT+P F+ AW   +R+ KQRN +L++   Y ++ 
Sbjct: 116 VITPESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQ 175

Query: 181 YWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSILE 240
           YWD+E  R  EQ+ + R  YV+ L  + + +   FLP+ D+ + + RGW+    +  +LE
Sbjct: 176 YWDREFIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLE 235

Query: 241 KNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSRGQLKLMVCALRVAQGQHLTELTGK 300
             + RD   G+T SGP+KADLR++V   P +D LSRGQLKL+VCALR+AQG+ L +   K
Sbjct: 236 SQYPRDLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQQIDK 295

Query: 301 QCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADML-DESSKTFHVAHG 358
             IYL+DD  SELD+  RQ L   L  TGAQVFV++I  + + D L    S+ FHV HG
Sbjct: 296 HSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPSRMFHVEHG 354