Pairwise Alignments

Query, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., DNA polymerase III, beta subunit from Dechlorosoma suillum PS

 Score =  315 bits (807), Expect = 1e-90
 Identities = 162/362 (44%), Positives = 243/362 (67%), Gaps = 1/362 (0%)

Query: 6   ERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEA 65
           +R  L+ PLQ VSG +  R +LPIL N+LL+ + + L+  ATD+E+++ +    EG    
Sbjct: 7   QRDTLLSPLQSVSGIVEKRHTLPILSNVLLEKKGDALTFLATDIEIQITTSAAAEGGEGD 66

Query: 66  GSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIEDWQSE 125
           G++TV ARK  DI R LP+   ++++LE  R+ VR G+SRF+L TLPA DFP +     +
Sbjct: 67  GAVTVGARKLQDILRSLPEGTEVSLVLEEKRLLVRGGKSRFTLQTLPADDFPRMAIGNDD 126

Query: 126 VQ-VSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQL 184
            +  S+TQ + R L+ +TQ++MA QDVRYYLNG+L   +G  LR+VATDGHR+A A  ++
Sbjct: 127 AKRFSVTQKQFRQLLAQTQYAMAAQDVRYYLNGLLLLTEGKELRAVATDGHRLAFASMEI 186

Query: 185 GADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPDY 244
            A+  ++++I+PRK VLEL +LL   +  + + +  + +R    + V  SKL+DG+FPDY
Sbjct: 187 EAELPRQELILPRKTVLELNRLLADSDDALEITLSANQVRFAFGNVVLVSKLIDGKFPDY 246

Query: 245 RRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEAEE 304
            RV+P     +L+ G   L Q+  RAAIL+NEKFRGVR+ L  N +++ A N EQEEA+E
Sbjct: 247 ERVIPATLKNSLELGRTALLQSMVRAAILTNEKFRGVRLVLQGNSLKVMAANAEQEEAQE 306

Query: 305 LLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVDDDSAMYVVMPI 364
            L+V + G+ +++GFNV Y+LDVLN +  D V ++ +DAN+SAL+    +D   YVVMP+
Sbjct: 307 ELEVEYAGDSLDVGFNVGYVLDVLNNVSSDTVTLNFNDANSSALITVPGNDRFKYVVMPM 366

Query: 365 RL 366
           R+
Sbjct: 367 RI 368



 Score = 32.3 bits (72), Expect = 2e-05
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 17/195 (8%)

Query: 2   KFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEG 61
           +F++ +    + L Q    +  +     L  LLL  E  +L   ATD      + + +E 
Sbjct: 129 RFSVTQKQFRQLLAQTQYAMAAQDVRYYLNGLLLLTEGKELRAVATDGHRLAFASMEIEA 188

Query: 62  EFEAGSITVPARKFLDICRGLPDS-AVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE 120
           E     + +P +  L++ R L DS   + + L  ++++   G +   ++ L    FP+ E
Sbjct: 189 ELPRQELILPRKTVLELNRLLADSDDALEITLSANQVRFAFG-NVVLVSKLIDGKFPDYE 247

Query: 121 DWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYL------NGMLFEIDGTTLRSVATDG 174
                    +  A L+  +E  + ++    VR  +       G+   + G +L+ +A + 
Sbjct: 248 --------RVIPATLKNSLELGRTALLQSMVRAAILTNEKFRGVRLVLQGNSLKVMAANA 299

Query: 175 HRMAVAQAQLGADFA 189
            +   AQ +L  ++A
Sbjct: 300 EQ-EEAQEELEVEYA 313