Pairwise Alignments

Query, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., DNA polymerase III, beta chain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  147 bits (371), Expect = 5e-40
 Identities = 92/372 (24%), Positives = 186/372 (50%), Gaps = 6/372 (1%)

Query: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60
           MKF +  + L   LQ +S  +  + +LPIL   L ++E+  LS+T +D E  +++ V + 
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  GEFEAGSITVPARKFLDICRGLPDSAV-ITVLLEGDRIQVRSGRSRFSLATLPASDFPNI 119
                G   V A+  LD  + +P+  +   V  +   I V+    ++SL    A +FP  
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQPLTFYVNTDNYEITVQYQNGKYSLMGQNADEFPQS 120

Query: 120 EDW-QSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMA 178
               ++ V+V +    L G I ++ F+ A+ ++R  +NG+ F+I    +  VA+DGH++ 
Sbjct: 121 AVLGENAVRVEMEAGVLLGGINRSVFATADDELRPVMNGIYFDITTEDITMVASDGHKLV 180

Query: 179 VAQAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVD 238
             +        +   I+P+K    L  LL   +  V ++    N    +  +    +L++
Sbjct: 181 RCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMVCRLIE 240

Query: 239 GRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPE 298
           GR+P+Y  V+PQ+    +    ++L  A  R +I S++    +++ + +N + I+A + +
Sbjct: 241 GRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVISAQDID 300

Query: 299 -QEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASAL---VENVDD 354
               AEE     + G  + IGF  ++++D+LN +  D V + ++D + + +   VE  ++
Sbjct: 301 FSTSAEETQVCQYSGAAMSIGFKSTFLIDILNNISADEVVIELADPSRAGVIVPVEQEEN 360

Query: 355 DSAMYVVMPIRL 366
           +  + ++MP+ L
Sbjct: 361 EDLLMLLMPMML 372