Pairwise Alignments

Query, 248 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

 Score = 92.8 bits (229), Expect = 6e-24
 Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 5/217 (2%)

Query: 27  VGMSGRYFPFTFVKQDELQGFEVDVWNEIGKRNDYKVEFVTANFSGLLGLLETGRIDTIS 86
           VG+     P ++++  E +GFEV++  EI KR D + EFV  +FS LL  +  G +D   
Sbjct: 34  VGVCTDLAPTSYIEDGEFKGFEVELIYEISKRLDLQPEFVVYSFSELLDAVSEGEVDCGI 93

Query: 87  NQITITDARKAKYLFSDPYVIDGAQITVRKGNEAIKGIDDLAGKTVAVNLGSNFEQLLRN 146
             I  T  R+ K  FS PY    + I VR  +  + GI  L  K+V V   S  E  L +
Sbjct: 94  GYIGKTPERQLKMDFSRPYGYTYSTILVRSDSNCV-GIKCLENKSVGVLKDSIEEYWLES 152

Query: 147 --HDKDGKINIKTYDTGIEHDVALGRADAFVMDRLSALELIEKTGLPLQLAGSPFETIEN 204
                D KI I      I +D+  G+ D+ V D +++L LI+     L++ G  F+ I  
Sbjct: 153 LLKSMDFKIIIYENQNDINNDLLSGKIDSEVTDHITSLYLIQDYDTELKIVGDKFDIIYV 212

Query: 205 AWPFVNNEKGQQLQGEVNKALAAMRADGTLSQIALKW 241
           A    N     +L+  ++ AL  M  DGTL ++  KW
Sbjct: 213 AIAIDNT--NPELKKSIDVALLEMENDGTLVKLKEKW 247