Pairwise Alignments

Query, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., Amino acid ABC transporter, permease protein from Pseudomonas fluorescens FW300-N2E2

 Score =  142 bits (359), Expect = 5e-39
 Identities = 78/202 (38%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 22  TLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQV 81
           TL +    +V + +L    A  R+    V   ++  Y SFFRGTPLL+Q+ L+Y GLPQ 
Sbjct: 65  TLFLCLCSIVASSLLGFITALARLSSSAVAFGIASFYASFFRGTPLLIQILLIYLGLPQ- 123

Query: 82  FPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIIL 141
             L V   A +A +I L+L++ AY++E  RA I+G+   Q EASL++G++ +    R+ L
Sbjct: 124 --LGVVPGAIAAGIIALSLNYGAYLSEIFRAGILGVPHGQREASLALGLSETVIFWRVTL 181

Query: 142 PQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWV 201
           PQA R  +P   N FI M+K +SL   +GV E+M  AQ    SS+R+ E     A+IYW+
Sbjct: 182 PQAMRTIIPPTTNQFISMLKDSSLISVMGVWEVMFLAQSYGRSSYRYIEMLTTAAIIYWL 241

Query: 202 VVLVLTRLQSWAEQKLNKAYAR 223
           + + L  +Q+  E+   KAY +
Sbjct: 242 MSIALELIQARMERHYGKAYLK 263