Pairwise Alignments

Query, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  131 bits (329), Expect = 1e-35
 Identities = 81/216 (37%), Positives = 127/216 (58%), Gaps = 14/216 (6%)

Query: 9   LELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLL 68
           ++ LP  +     TL++    ++  LI+A+ L   R  +   +  L   YI FFRGTPLL
Sbjct: 7   IKWLPSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRGTPLL 66

Query: 69  VQLFLLYYGLPQ--------VFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRS 120
           VQLFL+YYG+ Q        ++P L   D +  A+I +TLH AAY+AE IR AI  +   
Sbjct: 67  VQLFLVYYGMAQFDVVRQSALWPYL--RDPYWCAIITMTLHTAAYIAEIIRGAIQNVPHG 124

Query: 121 QMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQM 180
           ++EA+ ++GM+ SQA+  IILP+ATR+ LP+  N  I M+K+++LA T+ + E+   A+ 
Sbjct: 125 EIEAARALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGMARK 184

Query: 181 EASSSFRFFEAFLAVALIYWVVVLVLTR----LQSW 212
            A+ ++   E FL   LIY ++  +L +    L+ W
Sbjct: 185 IAARTYLHEEMFLTAGLIYLLIAFILMQGFKLLERW 220