Pairwise Alignments

Query, 541 a.a., membrane protein insertase YidC from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., Inner membrane protein translocase component YidC, long form from Pseudomonas fluorescens FW300-N2E2

 Score =  460 bits (1184), Expect = e-134
 Identities = 248/556 (44%), Positives = 346/556 (62%), Gaps = 26/556 (4%)

Query: 1   MDSQRNILLIALALVSFLLFQQWQVAKNPAPQATQQAQSTGAAP----AP----SFSDEL 52
           MD +R IL++ALA+VS+++  +W      A   TQ   ++  AP    AP    + S++ 
Sbjct: 1   MDIKRTILIVALAIVSYVMVLKWNQDYGQAALPTQNVAASNTAPSLPDAPVGNNAASNDD 60

Query: 53  DPTPAQNVAAKAKT--------ITVSTDVLTLSIDTLGGDVVSAKLNQYSEELNSPE-SF 103
            P  A + +A A+         I + TDVL L+ID  GGDV   KL  Y    + PE  F
Sbjct: 61  IPRAASDTSAPAEAPVAVSKDLIQIKTDVLELAIDPQGGDVAQLKLPLYPRRQDHPEIPF 120

Query: 104 VLLQNTQGHQFIAQSGLVGPQGIDVTSNNRPAYQVSADSFTLAEGQDELRIPMTYQANGI 163
            L  N     ++AQSGL+G  G D +   RP Y     ++ LA+GQD+L + + +  +G+
Sbjct: 121 QLFDNGNERTYLAQSGLIGTNGPDSSPAGRPVYSAEKKTYQLADGQDQLVVDLKFSKDGV 180

Query: 164 DYTKTFILKRGSYAVDVVFDVANNSGSEATLGMYAHLRQNLLD---SGGNLAMPTYRGGA 220
           +Y K F LKRG Y V V + + N S    +  M+A L+++  D   S       TY G A
Sbjct: 181 NYIKRFTLKRGLYDVTVSYLIDNQSAQPWSGAMFAQLKRDASDDPSSSTATGTATYLGAA 240

Query: 221 YSTSDVRYKKYSFDDMKDRNLSAPNDVTVNWVAMIQHYFASAWIPRDEPQAQLYSRVINN 280
             TS   YKK S  DM    +     V   WVA +QHYF +AWIP+      + +R  + 
Sbjct: 241 LWTSSEPYKKVSMKDMDKGQIK--ETVQGGWVAWLQHYFVTAWIPQKGENNVVQTRK-DG 297

Query: 281 LGD--MGIRTPNKTIANGDKAEFEATLWVGPKLQDQMAATAPNLDLVVDYGWLWFIAKPL 338
            G+  +G   P  T A G K E  A L+ GPK Q  +   +P L+L VDYG+LWFIA+P+
Sbjct: 298 KGNYIVGYTGPALTAAPGAKVETSAILYAGPKSQAVLKELSPGLELTVDYGFLWFIAQPI 357

Query: 339 HWLLSVIQTFVGNWGVAIICLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLQAMRERIGDD 398
            WLL  I + VGNWG +II LT +++G  +PL+ A Y SMA+MR + PKL A++E+ GDD
Sbjct: 358 FWLLQHIHSIVGNWGWSIIFLTMLIKGIFFPLSAASYKSMARMRAVAPKLAALKEQHGDD 417

Query: 399 RQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESVELRHSPFFGWIHDLSA 458
           RQ+MSQ MMELYKKEK+NPLGGCLPIL+QMP+F+ALYW L+ESVE+R +PF  WI DLS 
Sbjct: 418 RQKMSQAMMELYKKEKINPLGGCLPILVQMPVFLALYWVLLESVEMRQAPFMLWITDLSI 477

Query: 459 QDPYYILPLLMGASMFVIQKMSPTTITDPMQQKIMTFMPVMFTFFFLWFPSGLVLYWLVS 518
           +DP++ILP++MGA+MF+ Q+++PT   DPMQ K+M  MP++FTFFFLWFP+GLVLYW+V+
Sbjct: 478 KDPFFILPIIMGATMFIQQQLNPTP-PDPMQAKVMKMMPIIFTFFFLWFPAGLVLYWVVN 536

Query: 519 NIVTLIQQTLIYKALE 534
           N++++ QQ  I + +E
Sbjct: 537 NVLSITQQWYITRKIE 552