Pairwise Alignments

Query, 541 a.a., membrane protein insertase YidC from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., inner membrane protein, 60 kDa (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  583 bits (1504), Expect = e-171
 Identities = 299/543 (55%), Positives = 373/543 (68%), Gaps = 6/543 (1%)

Query: 1   MDSQRNILLIALALVSFLLFQQWQVAKNPAPQATQQAQSTGAAPAPSFS-DELDPTPAQN 59
           M+SQRNILLI L  VSFLL+QQWQ  K P P AT+ +    A    S    E D      
Sbjct: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTGVPAA 60

Query: 60  VAAKAKTITVSTDVLTLSIDTLGGDVVSAKLNQYSEELNSPESFVLLQNTQGHQFIAQSG 119
           VAA    ITV TD L + I+ +GGD+V A L  +  E    + FVLL+ T+   +IAQSG
Sbjct: 61  VAATQNLITVKTDQLDVQINPVGGDIVYAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG 120

Query: 120 LVGPQGIDVTSNNRPAYQVSADSFTLAEGQDELRIPMTYQA-NGIDYTKTFILKRGSYAV 178
           L+G  GID ++  R  +  S   FTLA+GQD L +P+TY A NG+ YTK F+  RG + V
Sbjct: 121 LIGRDGIDSSAKGRAIFAASKTEFTLADGQDSLEVPLTYVAENGVTYTKVFVFHRGKFNV 180

Query: 179 DVVFDVANNSGSEATLGMYAHLRQNLLDSGGNLAMPTYRGGAYSTSDVRYKKYSFDDMKD 238
           ++ + + N S +   + MY  ++Q +  S  ++ MPTYRG A+ST+ VRY+KY+F+DM  
Sbjct: 181 NIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTASVRYEKYNFEDMGK 240

Query: 239 RNLSAPNDVTVNWVAMIQHYFASAWIPRDEPQAQLYSRV-INNLGDMGIRTPNKTIANGD 297
            NL+ P      W AM+QHYF SAWIP       ++S V    L ++G R     +A G 
Sbjct: 241 NNLNQPT--IGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDVAPGA 298

Query: 298 KAEFEATLWVGPKLQDQMAATAPNLDLVVDYGWLWFIAKPLHWLLSVIQTFVGNWGVAII 357
             E  +  +VGPK Q  ++A +  L+LVVDYG+LW++A P+HWLL   Q+FVGNWGVAII
Sbjct: 299 TQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAII 358

Query: 358 CLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNP 417
            +T  VRG ++PLTKAQYTSMAKMR LQPKLQ ++ER GDDRQ+M Q MMELYKKEKVNP
Sbjct: 359 LITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNP 418

Query: 418 LGGCLPILLQMPIFIALYWALMESVELRHSPFFGWIHDLSAQDPYYILPLLMGASMFVIQ 477
           +GGCLPILLQMPIFIALYW L+ES ELRH+PF  WIHDLS QDPYYILPLLMG SMF++Q
Sbjct: 419 MGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGVSMFIMQ 478

Query: 478 KMSPTTIT-DPMQQKIMTFMPVMFTFFFLWFPSGLVLYWLVSNIVTLIQQTLIYKALEKK 536
           KM P   T DPMQ K+M +MPV+FT FFLWFPSGLVLYWLV NIV +IQQ +IY  LEKK
Sbjct: 479 KMQPIAPTMDPMQVKMMQWMPVIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKK 538

Query: 537 GLH 539
           GL+
Sbjct: 539 GLN 541