Pairwise Alignments

Query, 541 a.a., membrane protein insertase YidC from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., protein translocase subunit yidC (RefSeq) from Shewanella sp. ANA-3

 Score =  587 bits (1513), Expect = e-172
 Identities = 301/542 (55%), Positives = 373/542 (68%), Gaps = 6/542 (1%)

Query: 1   MDSQRNILLIALALVSFLLFQQWQVAKNPAPQATQQAQSTGAAPAPSFS-DELDPTPAQN 59
           M+SQRNILLI L  VSFLL+QQWQ  K P P AT+ +    A    S    E D +    
Sbjct: 1   MESQRNILLIGLLFVSFLLWQQWQADKAPKPVATESSVVANATTNHSADVPEADTSVPAA 60

Query: 60  VAAKAKTITVSTDVLTLSIDTLGGDVVSAKLNQYSEELNSPESFVLLQNTQGHQFIAQSG 119
           + A    ITV TD L + I+ +GGD+V A L  +  E    + FVLL+ T+   +IAQSG
Sbjct: 61  LTATQNLITVKTDQLDVQINPVGGDIVFAALVSHKLEQGKDQPFVLLEQTKDFTYIAQSG 120

Query: 120 LVGPQGIDVTSNNRPAYQVSADSFTLAEGQDELRIPMTYQA-NGIDYTKTFILKRGSYAV 178
           L+G  GID ++  R A+  +   FTLA+GQD L +P+TY A NG+ YTK F+  RG + V
Sbjct: 121 LIGRDGIDSSAKGRAAFAANKTEFTLADGQDTLEVPLTYVADNGVTYTKVFVFHRGKFNV 180

Query: 179 DVVFDVANNSGSEATLGMYAHLRQNLLDSGGNLAMPTYRGGAYSTSDVRYKKYSFDDMKD 238
           D+ + + N S +   + MY  ++Q +  S  ++ MPTYRG A+ST DVRY+KY F+DM  
Sbjct: 181 DIDYKINNTSAAPLQVQMYGQIKQTIKPSESSMMMPTYRGAAFSTQDVRYEKYKFEDMSK 240

Query: 239 RNLSAPNDVTVNWVAMIQHYFASAWIPRDEPQAQLYSRV-INNLGDMGIRTPNKTIANGD 297
            NL+ P      W AM+QHYF SAWIP       ++S V    L ++G R     IA G 
Sbjct: 241 SNLNQPT--LGGWAAMLQHYFVSAWIPPATDSNTIFSSVSAGGLANIGFRGAVYDIAPGA 298

Query: 298 KAEFEATLWVGPKLQDQMAATAPNLDLVVDYGWLWFIAKPLHWLLSVIQTFVGNWGVAII 357
             E  +  +VGPK Q  ++A +  L+LVVDYG+LW++A P+HWLL   Q+FVGNWGVAII
Sbjct: 299 TQEISSQFYVGPKDQKALSALSDTLNLVVDYGFLWWLAVPIHWLLMFYQSFVGNWGVAII 358

Query: 358 CLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNP 417
            +T  VRG ++PLTKAQYTSMAKMR LQPKLQ ++ER GDDRQ+M Q MMELYKKEKVNP
Sbjct: 359 LITLTVRGLLFPLTKAQYTSMAKMRNLQPKLQDLKERFGDDRQKMGQAMMELYKKEKVNP 418

Query: 418 LGGCLPILLQMPIFIALYWALMESVELRHSPFFGWIHDLSAQDPYYILPLLMGASMFVIQ 477
           +GGCLPILLQMPIFIALYW L+ES ELRH+PF  WIHDLS QDPYYILPLLMGASMFV+Q
Sbjct: 419 MGGCLPILLQMPIFIALYWVLLESFELRHAPFMLWIHDLSVQDPYYILPLLMGASMFVMQ 478

Query: 478 KMSPTTIT-DPMQQKIMTFMPVMFTFFFLWFPSGLVLYWLVSNIVTLIQQTLIYKALEKK 536
           KM P   T DPMQ K+M +MP++FT FFLWFPSGLVLYWLV NIV +IQQ +IY  LEKK
Sbjct: 479 KMQPIAPTMDPMQVKMMQWMPMIFTVFFLWFPSGLVLYWLVGNIVAIIQQKIIYAGLEKK 538

Query: 537 GL 538
           GL
Sbjct: 539 GL 540