Pairwise Alignments

Query, 453 a.a., tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  241 bits (614), Expect = 5e-68
 Identities = 160/464 (34%), Positives = 248/464 (53%), Gaps = 25/464 (5%)

Query: 4   DTIVAQATAPGRGGVGIIRVSGPLAAHVAQTVTGRTLRPRYAEYLPFTDEDG------QQ 57
           DTI A AT  G+GG+GIIR+SGP +  V + +  R    R+  + P+T   G        
Sbjct: 5   DTIAAIATPLGQGGIGIIRISGPASLEVLRALF-RPSSSRFGGFRPWTLHHGTITDGCDP 63

Query: 58  LDQGIALFFPNPHSFTGEDVLELQGHGGPVVMDMLIRRILQIKGVRPARPGEFSERAFLN 117
           LD  +A+  P P +FTGEDV E+  HGG  V+  ++   ++  G R A  GEF+ RAFLN
Sbjct: 64  LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGARYAERGEFTRRAFLN 122

Query: 118 DKMDLTQAEAIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPE 177
            +MDLTQAEA+A++I A S +  + A   L G   +R+  L   L  LR+ +  A+DFPE
Sbjct: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182

Query: 178 EEIDFLADGKVSADLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSSLLNALSG 237
           EE++ LA     A+++ +   +  +     +    ++G  VV+AG+ NAGKSSL+NAL G
Sbjct: 183 EEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALLG 242

Query: 238 KESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR 297
           +  AIVTD+ GTTRD + E +++ G+ + + DTAGLR+  D VE+ G+  + + + QAD 
Sbjct: 243 RRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQADL 302

Query: 298 VLFMVDGTTTEATDPQDIWPDFVDKL----PENIGITVIRNKADQTGEPLGICHVNQPTL 353
           VL + D T       Q +    ++ L    PE   + V+ NK D     +          
Sbjct: 303 VLLVTDAT-------QGLQGPELELLRHAGPER--VLVVFNKTDLLEGRILPSTPEGCRS 353

Query: 354 IRLSAKTGQGVD----ALRQHLKECMGFSGNQEGGFMARRRHLDALERAAEHLAIGQQQL 409
           + ++A +G GV+    A+R  +    G    + G      R   AL++AA  L      +
Sbjct: 354 VHVAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDI 413

Query: 410 EGYMAGEILAEELRIAQQHLNEITGEFSSDDLLGRIFSSFCIGK 453
             ++  ++    L  A   L ++TG+ + + +L  IF+SFCIGK
Sbjct: 414 RAHVPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457