Pairwise Alignments

Query, 137 a.a., rhs-related protein from Pseudomonas syringae pv. syringae B728a

Subject, 1584 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2C3

 Score = 67.8 bits (164), Expect = 6e-16
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 8/125 (6%)

Query: 13   EEFRYDAAANRLNFNTSRFDHVKDNRLKQWANHEYKYDAWGNLIEKVVGIVRWQTFTYDC 72
            E F +DAA N L  +      +K NRL +  +  Y YDA+GNLI +  G      + YD 
Sbjct: 1166 EHFSHDAAGNLLMQDRPGPTTLKGNRLLREGDRHYDYDAFGNLIRERRGQALVSAYRYDS 1225

Query: 73   ENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLRMLREESPGQ 132
            ++RL+   T AD +    +SY+YD+ GRR++K   + G T    F WQG +++ E SP  
Sbjct: 1226 QHRLIGV-TGADGR---ETSYRYDAFGRRISK--TVDGLT--TEFFWQGDQLVAENSPRH 1277

Query: 133  SSLYL 137
               Y+
Sbjct: 1278 HRSYV 1282



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 7    GRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLKQWANHEYKYDAWGNLIEKVVGIVRWQ 66
            G +++  E   D +     +       ++   L      EY+YD  G LI+   G     
Sbjct: 958  GHLLEKTEHGEDGSQRITRYQRDAAGRLRIKTLPDGQAIEYRYDDLGRLIQVDDGSDHPL 1017

Query: 67   TFTYDCENRLVKTETMADTQVESTSSYQYDSLGR 100
             F YD ++RLV      + Q   T  Y+YD+ GR
Sbjct: 1018 AFEYDAQDRLV-----TEHQGWGTLRYRYDACGR 1046



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 16  RYDAAANRLNFNTSRFDHVKDNRLKQWANHEYKYDAWGNLIEKVVGIVRWQTFTYDCENR 75
           RYD       F  SR   + +  L       + YDA G L+ +         + +D   R
Sbjct: 793 RYDPDGGEHRFTWSRLGQLTEEVLPDGGRRCFAYDALGRLLSRRDEHGALTHYQWDAVGR 852

Query: 76  LVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQT 112
           L++          +T ++ Y++ G+ +A++ E +G+T
Sbjct: 853 LLQ----VTLPTGATRAWSYNAYGKVIAERDE-QGRT 884



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 47  YKYDAWGNLIEKVVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVA 103
           Y +D    L+ KV          YD + RL+  +      + + S Y+YD +GR VA
Sbjct: 679 YVHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQD----PLGAVSEYRYDDVGRLVA 731