Pairwise Alignments

Query, 448 a.a., PAS from Pseudomonas syringae pv. syringae B728a

Subject, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  314 bits (804), Expect = 4e-90
 Identities = 177/408 (43%), Positives = 246/408 (60%), Gaps = 3/408 (0%)

Query: 23  LTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKTHRDFCEPEMLRSREYADL 82
           +  +L + +A +E    G ++ AN  FL A+GYR EEL  K HR FC P   +S++Y   
Sbjct: 19  IVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQF 78

Query: 83  WASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVKVVKYALDVTTRVMLENET 142
           W SL  GK  SGTF R  K+G  + LEA+Y P+    G V  V+K A DVT + +     
Sbjct: 79  WTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIK-TDGKVSSVMKIASDVTEQYLHAESQ 137

Query: 143 SSKLAAVDRAMAICEFEPNGNVITANNNFLNVMGYALAEIKGKHHRSFCEPTLVNSPEYT 202
              L A+++  A+ EFEP+G +I+AN+ FL  MGY+L +IKGKHHR FC        ++ 
Sbjct: 138 RDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQ--QHP 195

Query: 203 EFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDVDGKLYKIVKFASDITQRVEKQE 262
            FW+ L  G+    +F R    G  VW++A+Y+PV D + K+YKIVKFASDIT  V +++
Sbjct: 196 TFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQ 255

Query: 263 ADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQISENIGASAKLVSQLGDRSEQITA 322
                A+ AY  S ET +VA+ G  V+Q++ R   ++  NI  S + + QL   S+ ++ 
Sbjct: 256 QVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE 315

Query: 323 IVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSGSTTEIAEMIGK 382
           IV TI GIADQTNLLALNAAIEAARAG+QGRGFAVVADEVRQLA RTS +T EI +++ K
Sbjct: 316 IVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNK 375

Query: 383 ILAETREAVASMDATQEGAIRGVTLADQAGQVIVQIRDGASDAVEAVN 430
            L+ T    +S+    + A        +   ++ QI  GA +   AV+
Sbjct: 376 NLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVS 423



 Score =  100 bits (248), Expect = 1e-25
 Identities = 94/329 (28%), Positives = 151/329 (45%), Gaps = 45/329 (13%)

Query: 5   KNKAELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKT 64
           K  +++T      +  + L +AL ++ AV+E   DG I+ AN  FL  MGY  +++  K 
Sbjct: 122 KIASDVTEQYLHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKH 181

Query: 65  HRDFCEPEMLRSREYADLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVK 124
           HR FC  E    +++   W SL AG+  SG F R    G  VW++ASY+PV D    V K
Sbjct: 182 HRLFCFDEFY--QQHPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYK 239

Query: 125 VVKYALDVTTRVMLENE-TSSKLAAVDRAMAICEFEPNGNVITANNNFLNVMGYALAE-I 182
           +VK+A D+T  V+ E + T +   A   ++   +    GN +  ++         LAE +
Sbjct: 240 IVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDS-------VRLAEKM 292

Query: 183 KGKHHRSF--CEPTLVNSPEYTEFWRKLNHGEFIGDQFK-----------RIGKQGRVVW 229
            G   +S    E  +V S + +E  + ++    I DQ             R G+QGR   
Sbjct: 293 VGNIEQSLQQIEQLVVLSKDVSEIVKTISG---IADQTNLLALNAAIEAARAGEQGRGFA 349

Query: 230 LEATYNPVFDVDGKLYKIVKFASDITQRVEKQ----EADAHGASRAYHISAETE-KVAEQ 284
           + A      +V     +  K   +I Q V K     EA     S+   I+ ET  ++ E 
Sbjct: 350 VVAD-----EVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEV 404

Query: 285 GTLVIQETAREMRQISENIGASAKLVSQL 313
            T++      ++ Q +EN+ ++   VSQL
Sbjct: 405 STIM-----EQIYQGAENVSSA---VSQL 425