Pairwise Alignments

Query, 470 a.a., DNA circulation, N-terminal from Pseudomonas syringae pv. syringae B728a

Subject, 438 a.a., prophage MuSo2, DNA circulation protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (254), Expect = 3e-26
 Identities = 112/482 (23%), Positives = 194/482 (40%), Gaps = 86/482 (17%)

Query: 9   LPASFRGVGFFIEKAVVPAGRKGQLHEFPQRDEPYFESLGKQSKVHTLTGFIVGPDCFEQ 68
           L ASFRGV F +E+A   +GR+   H +P+++  Y E  GK      ++G +VG D FEQ
Sbjct: 7   LTASFRGVEFLLEEADGESGRRAIPHAYPKKEIGYTEDNGKVLTQERISGRVVGADYFEQ 66

Query: 69  RDKLLQALEQEGAGELVHPWLGRVQVQVGECGVTHNLSE--GGLVRLDLKFYPANPLKFP 126
              LL+AL ++G GELVHPW G  +VQ+G+  V+H L     G   +  + +      FP
Sbjct: 67  LQALLEALNKQGPGELVHPWFGIRKVQIGK--VSHKLINRVDGTATISFEVFEVGENLFP 124

Query: 127 VSTLNTRRQLLGASESLLDSALRRYRSVMAT---------VDAVRINIQALRSALSGVFA 177
            +  +T  Q+   +++  D+    +     T         VD    ++  L   L  +  
Sbjct: 125 TAKSDTANQVNTEADATKDAVNNAFEGDFDTGTLDGAGDMVDQFLDDLDELTRGLPSLPD 184

Query: 178 TIQRQFTPFMTIYSDVTAL-----------------VHSLVNAPLTVSTLFSTFFASFDG 220
            +++     M     V  L                 V S+V  P+    +++   + + G
Sbjct: 185 DLRQWTDRLMRTKDSVGELLAYPGDLARETMGLLEDVKSVVKDPIRALDVYANVQSRWQG 244

Query: 221 DSRRARRANGTSSIGGASTGAGSGSSTGGGSGNGSASGSNGTAASSAAARSGSNGGVSSV 280
              RA  A                  TGG S N ++ G   ++    A  S +    ++ 
Sbjct: 245 --ARAELA-----------------ITGGLSRNIASEGGVASSVPKFANPSKNAVIAANA 285

Query: 281 ETVDYRSVISEATQQAEAVSGINLVSQSSGLDTGVTAQAAANLVQDALLVKVAKIVASMP 340
           E     ++ S A  Q  A++  ++V +    DT  T ++ +   ++A+L           
Sbjct: 286 EAFKTLALHSSAVSQCYALASADIVQKLD--DTEQTVESLSGAERNAILTGQQLKSLGYG 343

Query: 341 VATTVTPLTVVPSLDQQVTQALQRVDVPVADDVIELRDTLSSAIWEASLKADPEHYLVLN 400
           +A T+                        A D +E     SSA+W    K          
Sbjct: 344 IADTL---------------------ATYAADAVEAG---SSAVWRQMRK---------- 369

Query: 401 TLRQALIRHLNAVAASGVRLVDLKVSEPLPALVLAYRRFGDASRAQEMVQRNRLAHPGFV 460
            LRQA++      A    ++   +  + +P  ++A+++ G+  R   +VQRN  A+P F+
Sbjct: 370 -LRQAVLADTRERAELLPQVSLYQAKQSVPVALVAWQQTGNTERRDSIVQRNGFANPAFI 428

Query: 461 PP 462
            P
Sbjct: 429 LP 430