Pairwise Alignments

Query, 455 a.a., DNA replication and repair protein RadA from Pseudomonas syringae pv. syringae B728a

Subject, 455 a.a., putative DNA repair protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  389 bits (1000), Expect = e-113
 Identities = 204/459 (44%), Positives = 300/459 (65%), Gaps = 10/459 (2%)

Query: 1   MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIR 60
           MAK K +Y C+ CG   PKW G+C  CG WNT VE ++        T R   +G + Q  
Sbjct: 1   MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKET----TNRRPVSGIETQKA 56

Query: 61  T---LAEVSVEEIPRFSTNSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQ 117
               L+E+  ++ PR + +  EL+RVLGGGLV GS+VLIGG+PGIGKST+++QT+  +  
Sbjct: 57  KPVILSEIEADDEPRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMPD 116

Query: 118 RMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIATAKVEKPKVMVIDSIQT 177
           +   LYV+GEES +Q+ +RA RL        ++ ET +E I    K   P +++IDSIQT
Sbjct: 117 KK-ILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKNTSPDLVIIDSIQT 175

Query: 178 IFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVL 237
           I TE ++S+PG ++QVRE +A ++R+AK++ T + L+GH+ KEG++AGP+VLEH+VDTVL
Sbjct: 176 ISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVL 235

Query: 238 YFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVM 297
            FEG+     R+LR++KNRFG+  ELG++ M   GL++VSNPS + L++  E + G  + 
Sbjct: 236 QFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIA 295

Query: 298 ATWEGTRPMLVEVQALVDDSHMSNPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLN 357
           +  EG RP L+E QALV  +   NP+R   G D  R+ MLLAVL +  G     +DVFLN
Sbjct: 296 SAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLN 355

Query: 358 VVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAAK 417
           + GG+KV + A DLA+++A++SS  +  +  ++ + GE+GLSGE+RPV   ++R+ EA K
Sbjct: 356 IAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGEIRPVNRIEQRIGEAEK 415

Query: 418 HGFKRAIVPKGNAPKEAPPGLQI--IAVTRLEQALDALF 454
            GFKR ++PK N        L+I  + V ++E+A  ALF
Sbjct: 416 LGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALF 454