Pairwise Alignments

Query, 486 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 484 a.a., AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor from Pseudomonas sp. BP01

 Score =  753 bits (1943), Expect = 0.0
 Identities = 383/484 (79%), Positives = 434/484 (89%), Gaps = 4/484 (0%)

Query: 1   MSKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFF 60
           M+KSL+SLAVTAFILGGCSLIPDY+ P APVAAQ+PQGPAYSP + A +AAAEQGWR FF
Sbjct: 1   MTKSLLSLAVTAFILGGCSLIPDYQTPDAPVAAQWPQGPAYSPTQSADVAAAEQGWRQFF 60

Query: 61  NDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQS 120
           +DPALQQLIQT+L+NNRDLRVAALN+DAYRAQYRIQR+DLFPAVSATGSGSRQRVP + S
Sbjct: 61  HDPALQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMS 120

Query: 121 QTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASVANA 180
           QTG+ GITS YSATLGVS+YELDLFGRVRSL+EQALETY +SE+ARRSTQI+LVASVANA
Sbjct: 121 QTGESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANA 180

Query: 181 YMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQ 240
           Y TWQAD+ L KLT++TLKTYEES+ LT R++EVGV+SALD+SQ+RTAVE AR K +QYQ
Sbjct: 181 YYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQ 240

Query: 241 RLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKA 300
           RLVAQD NSL +LLGT +P NL     L++D L E+PAGLPSD+LQRRPDI EAEH LKA
Sbjct: 241 RLVAQDVNSLTVLLGTGIPANLAKPLELNADQLAEVPAGLPSDILQRRPDIQEAEHLLKA 300

Query: 301 ANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASL 360
           ANANIGAARAAFFPSISLTA+AG+ S ++  LF GG G WLFQP IN+PIFNAG+LRASL
Sbjct: 301 ANANIGAARAAFFPSISLTANAGSLSPDMGHLFAGGQGTWLFQPQINLPIFNAGSLRASL 360

Query: 361 DYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRLAERRY 420
           DYSKIQK+I+VA YEK IQTAFQEVSDGLA+RKT++EQLQAQRD V ANQDYYRLAERRY
Sbjct: 361 DYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYYRLAERRY 420

Query: 421 RIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEK 480
           RIGIDSNLTFLDAQR+LFSAQQ+LITDRLSQLTSEVNLYKALGGGWYE+TGQ    + ++
Sbjct: 421 RIGIDSNLTFLDAQRNLFSAQQSLITDRLSQLTSEVNLYKALGGGWYEQTGQ----ANQQ 476

Query: 481 PSVQ 484
            SVQ
Sbjct: 477 ASVQ 480